CFinderADM000564's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E2: UBC | 0.000201747 | ubs family |
| vindoline and vinblastine biosynthesis | 0.000286676 | plantCyc |
| ubiquitin-dependent protein catabolic process | 0.003628963 | GO:0006511 |
| oxidation-reduction process | 0.003703339 | GO:0055114 |
| protein ubiquitination | 0.004681174 | GO:0016567 |
| ATPase activity, coupled to transmembrane movement of substances | 0.006021529 | GO:0042626 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 0.006021529 | GO:0016705 |
| ligase activity | 0.006021529 | GO:0016874 |
| ubiquitin-protein transferase activity | 0.006021529 | GO:0004842 |
| ATP binding | 0.006021529 | GO:0005524 |
| 2-alkenal reductase [NAD(P)] activity | 0.006021529 | GO:0032440 |
| monooxygenase activity | 0.006074094 | GO:0004497 |
| transmembrane transport | 0.016196751 | GO:0055085 |
| iron ion binding | 0.021989079 | GO:0005506 |
| heme binding | 0.023052981 | GO:0020037 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008842 | - | - |
| CRO_T010070 | AT2G46030 (5.00E-23) | UBC6|ubiquitin-conjugating enzyme 6 |
| CRO_T015051 | AT1G80090 (4.00E-12) | CBSX4|CBS domain containing protein 4 |
| CRO_T027850 | AT3G26210 (4.00E-87) | CYP71B23|cytochrome P450, family 71, subfamily B, polypeptide 23 |
| CRO_T029905 | AT3G13090 (1.00E-17) | ABCC6|ATP-binding cassette C6; ATMRP8|multidrug resistance-associated protein 8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000565 | Cytochrome_P450, Cytochrome P450: CYP81F hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc polysaccharide catabolic process beta-amylase activity vindoline and vinblastine biosynthesis flavonoid biosynthetic process flavonoid glucuronidation quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity membrane oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular membrane-bounded organelle chloroplast | details |
| CFinderADM000918 | polyamine-transporting ATPase activity polyamine transmembrane transport organic phosphonate transport organophosphate ester transport Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) organic phosphonate transmembrane-transporting ATPase activity ATPase activity, coupled to transmembrane movement of substances 2-alkenal reductase [NAD(P)] activity ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 transmembrane transport binding | details |
| CFinderADM001218 | ATPase activity, coupled to transmembrane movement of substances transmembrane transport 2-alkenal reductase [NAD(P)] activity ATP binding membrane | details |
| CFinderADM001278 | RNA splicing, via endonucleolytic cleavage and ligation long-day photoperiodism, flowering mRNA transport histone H3-K36 methylation primary miRNA processing histone H3-K4 methylation Golgi vesicle prefusion complex stabilization nuclear cap binding complex mRNA cis splicing, via spliceosome RNA cap binding retrograde transport, vesicle recycling within Golgi negative regulation of flower development Cul4-RING E3 ubiquitin ligase complex membrane coat Golgi transport complex Golgi organization retrograde vesicle-mediated transport, Golgi to ER glucose transmembrane transport Ubiquitin_Proteasome_system, E2: UBC structural molecule activity glucose import proton transport sugar:proton symporter activity glucose transmembrane transporter activity ubiquitin-dependent protein catabolic process response to abscisic acid vesicle-mediated transport RNA degradation intracellular protein transport protein ubiquitination ligase activity serine-type endopeptidase activity ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD integral component of plasma membrane Ribosome Spliceosome transport | details |
| CFinderADM001603 | plasma membrane Ubiquitin_Proteasome_system, E2: UBC ubiquitin-dependent protein catabolic process protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process zinc ion binding ATPase activity, coupled to transmembrane movement of substances ubiquitin protein ligase activity 2-alkenal reductase [NAD(P)] activity ligase activity ubiquitin-protein transferase activity oxidation-reduction process protein ubiquitination Protein processing in endoplasmic reticulum ATP binding Ubiquitin_Proteasome_system, E3: RING transmembrane transport oxidoreductase activity | details |
Expression profiles
 Show details about module gene expression profiling |