CFinderADM000612's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| thioredoxin pathway | 4.14E-05 | plantCyc |
| maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.000280129 | GO:0000463 |
| mRNA processing | 0.000717301 | GO:0006397 |
| cytoplasmic translation | 0.000839315 | GO:0002181 |
| poly(A) RNA binding | 0.001567017 | GO:0044822 |
| protein disulfide oxidoreductase activity | 0.002122405 | GO:0015035 |
| phosphoprotein phosphatase activity | 0.002122405 | GO:0004721 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.002548309 | GO:0043161 |
| mRNA surveillance pathway | 0.00337354 | KEGG pathway |
| cell redox homeostasis | 0.003595158 | GO:0045454 |
| protein dephosphorylation | 0.00400017 | GO:0006470 |
| electron carrier activity | 0.004409663 | GO:0009055 |
| ubiquitin protein ligase activity | 0.004409663 | GO:0061630 |
| protein ubiquitination | 0.00728257 | GO:0016567 |
| cytosolic large ribosomal subunit | 0.012137112 | GO:0022625 |
| Ubiquitin_Proteasome_system, E3: RING | 0.016982357 | ubs family |
| Ribosome | 0.018888636 | KEGG pathway |
| Golgi apparatus | 0.023732421 | GO:0005794 |
| structural constituent of ribosome | 0.039957751 | GO:0003735 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004640 | AT1G15215 (3.00E-51) | DTF1|DNA-binding transcription factor 1; SHH1|SAWADEE homeodomain homolog 1 |
| CRO_T016385 | - | - |
| CRO_T020503 | AT2G01735 (4.00E-13) | RIE1|RING-finger protein for embryogenesis |
| CRO_T022415 | AT1G73820 (3.00E-77) | Ssu72-like family protein |
| CRO_T032689 | AT4G28730 (3.00E-15) | GrxC5|glutaredoxin C5 |
| CRO_T033054 | AT1G80750 (6.00E-72) | Ribosomal protein L30/L7 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001013 | protein tyrosine phosphatase activity, metal-dependent microfibril phosphomannomutase activity GDP-mannose biosynthetic process GDP-mannose biosynthesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) L-ascorbate biosynthesis I (L-galactose pathway) poly(A) RNA binding peptidyl-tyrosine dephosphorylation cytoplasmic translation catalytic step 2 spliceosome Fructose and mannose metabolism mRNA splicing, via spliceosome multicellular organism development cytosolic large ribosomal subunit Ubiquitin_Proteasome_system, E3 adaptor: DWD Spliceosome Ribosome structural constituent of ribosome | details |
| CFinderADM001260 | mitochondrial respiratory chain complex IV peptidyl-tyrosine dephosphorylation aerobic respiration I (cytochrome c) cytochrome-c oxidase activity protein tyrosine phosphatase activity hydrogen ion transmembrane transport Oxidative phosphorylation nucleic acid binding nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |