CFinderADM000637's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mRNA surveillance pathway | 0.000830859 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: RING | 0.011727555 | ubs family |
| nucleic acid binding | 0.04350659 | GO:0003676 |
| nucleotide binding | 0.04350659 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004000 | - | - |
| CRO_T011632 | - | - |
| CRO_T015681 | AT3G15010 (8.00E-15) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T021951 | - | - |
| CRO_T032648 | AT5G55970 (1.00E-18) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000178 | Transcription_related, Transcription factor: ERF | details |
| CFinderADM000636 | details | |
| CFinderADM001042 | mRNA surveillance pathway 2-oxoglutarate decarboxylation to succinyl-CoA Golgi to plasma membrane protein transport galactolipid biosynthetic process Golgi vesicle docking mRNA transport long-day photoperiodism, flowering RNA splicing, via endonucleolytic cleavage and ligation hydrogen peroxide biosynthetic process primary miRNA processing mRNA cis splicing, via spliceosome nuclear cap binding complex oxoglutarate dehydrogenase (succinyl-transferring) activity RNA cap binding cullin deneddylation Golgi stack calcium-dependent cysteine-type endopeptidase activity COP9 signalosome protein complex membrane coat mitochondrial outer membrane proteolysis thiamine pyrophosphate binding intra-Golgi vesicle-mediated transport structural molecule activity Autophagy - yeast tricarboxylic acid cycle nucleotide binding response to abscisic acid vesicle-mediated transport ATPase activity intracellular protein transport serine-type endopeptidase activity Ribosome Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001193 | Golgi vesicle budding nucleic acid binding uridylate kinase activity cytidylate kinase activity pyrimidine nucleotide biosynthetic process phospholipid-translocating ATPase activity nucleotide binding phospholipid translocation 'de novo' pyrimidine nucleobase biosynthetic process CMP phosphorylation UTP and CTP de novo biosynthesis nucleotide phosphorylation pyrimidine ribonucleotides interconversion Pyrimidine metabolism mRNA surveillance pathway magnesium ion binding ATP binding transport Golgi membrane trans-Golgi network intracellular | details |
| CFinderADM001919 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase oxoglutarate dehydrogenase (succinyl-transferring) activity 2-oxoglutarate decarboxylation to succinyl-CoA thiamine pyrophosphate binding mitochondrial respiratory chain complex I aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation ATP synthesis coupled electron transport tricarboxylic acid cycle 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding response to oxidative stress NADH dehydrogenase (ubiquinone) activity mRNA surveillance pathway electron carrier activity ligase activity Carbon metabolism Oxidative phosphorylation protein phosphorylation nucleic acid binding nucleotide binding protein serine/threonine kinase activity | details |
| CFinderADM001921 | mRNA surveillance pathway galactolipid biosynthetic process cell tip growth hydrogen peroxide biosynthetic process membrane coat protein complex mitochondrial outer membrane structural molecule activity potassium ion transmembrane transporter activity potassium ion transmembrane transport vesicle-mediated transport intracellular protein transport ligase activity vacuolar membrane | details |
Expression profiles
 Show details about module gene expression profiling |