CFinderADM000702's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin mediated proteolysis | 1.05E-07 | KEGG pathway |
| ubiquitin protein ligase activity | 8.69E-07 | GO:0061630 |
| calcium ion binding | 4.54E-06 | GO:0005509 |
| phospholipase D activity | 5.08E-05 | GO:0004630 |
| N-acylphosphatidylethanolamine-specific phospholipase D activity | 5.08E-05 | GO:0070290 |
| oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | 5.08E-05 | GO:0050664 |
| phosphatidylcholine metabolic process | 0.00010376 | GO:0046470 |
| choline biosynthesis III | 0.000138344 | plantCyc |
| Ubiquitin_Proteasome_system, E2: UBC | 0.000201747 | ubs family |
| phosphatidate metabolism, as a signaling molecule | 0.000233553 | plantCyc |
| Glycerophospholipid metabolism | 0.00034545 | KEGG pathway |
| phospholipases | 0.000345539 | plantCyc |
| ubiquitin protein ligase binding | 0.0006589 | GO:0031625 |
| cytoplasm | 0.000721742 | GO:0005737 |
| lipid catabolic process | 0.000739044 | GO:0016042 |
| multicellular organism development | 0.0016204 | GO:0007275 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.0016204 | GO:0042787 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.0016204 | GO:0043161 |
| ubiquitin-dependent protein catabolic process | 0.001750039 | GO:0006511 |
| peroxidase activity | 0.001940358 | GO:0004601 |
| ligase activity | 0.002541026 | GO:0016874 |
| cellular oxidant detoxification | 0.003108204 | GO:0098869 |
| protein ubiquitination | 0.005079284 | GO:0016567 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008173 | - | - |
| CRO_T019729 | AT5G49740 (3.00E-13) | ATFRO7|FERRIC REDUCTION OXIDASE 7 |
| CRO_T019764 | AT3G61790 (6.00E-155) | Protein with RING/U-box and TRAF-like domains |
| CRO_T024664 | AT1G63800 (1.00E-35) | UBC5|ubiquitin-conjugating enzyme 5 |
| CRO_T030569 | AT4G32270 (8.00E-24) | Ubiquitin-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000161 | vacuole Hippo signaling pathway -fly formation of glycosidic bonds, GlycosylTransferases: GTnc oligosaccharyltransferase complex 1,3-β-D-glucan biosynthesis xylan biosynthesis 1-phosphatidylinositol-4-phosphate 5-kinase activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor 1,3-beta-D-glucan synthase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc 1,3-beta-D-glucan synthase activity protein-cysteine S-palmitoyltransferase activity D-myo-inositol (1,4,5)-trisphosphate biosynthesis protein N-linked glycosylation pollen germination (1->3)-beta-D-glucan biosynthetic process 3-phosphoinositide biosynthesis beta-galactosidase activity phosphatidylinositol phosphorylation cellulose synthase (UDP-forming) activity Inositol phosphate metabolism N-Glycan biosynthesis cellulose biosynthetic process response to stress peroxidase activity carbohydrate binding cellular oxidant detoxification cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: F-box calcium ion binding | details |
| CFinderADM000292 | nucleoside metabolic process apigeninidin 5-O-glucoside biosynthesis luteolinidin 5-O-glucoside biosynthesis integral component of membrane histidinol dehydrogenase activity L-histidine biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc histidine biosynthetic process sucrose metabolic process catalytic activity sucrose alpha-glucosidase activity Calcium signaling pathway Galactose metabolism cell wall organization or biogenesis pollen development ubiquitin protein ligase binding O-acetyltransferase activity Ubiquitin_Proteasome_system, E2: UBC ubiquitin-dependent protein catabolic process quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity NAD binding Biosynthesis of amino acids Ubiquitin mediated proteolysis flavonoid glucuronidation formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB flavonoid biosynthetic process ubiquitin protein ligase activity protein ubiquitination vacuole | details |
| CFinderADM000962 | cellular response to stimulus L-serine transport argininosuccinate metabolic process L-serine transmembrane transporter activity argininosuccinate synthase activity urea cycle arginine biosynthetic process Ubiquitin_Proteasome_system, E3: RING Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ubiquitin-dependent protein catabolic process Transcription_related, Transcription factor: bHLH Biosynthesis of amino acids Ubiquitin mediated proteolysis anchored component of plasma membrane cytoplasm ubiquitin protein ligase activity protein ubiquitination | details |
Expression profiles
 Show details about module gene expression profiling |