CFinderADM000734's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosolic large ribosomal subunit | 2.66E-08 | GO:0022625 |
| RNA polyadenylation | 3.47E-06 | GO:0043631 |
| RNA 3'-end processing | 3.47E-06 | GO:0031123 |
| translation | 7.07E-06 | GO:0006412 |
| Ribosome | 9.00E-06 | KEGG pathway |
| structural constituent of ribosome | 1.67E-05 | GO:0003735 |
| nucleotidyltransferase activity | 0.00019385 | GO:0016779 |
| mRNA surveillance pathway | 0.00115397 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000098 | - | - |
| CRO_T005610 | - | - |
| CRO_T011904 | AT3G06560 (3.00E-04) | PAPS3|poly(A) polymerase 3 |
| CRO_T017006 | AT3G09630 (3.00E-174) | Ribosomal protein L4/L1 family |
| CRO_T033305 | AT3G09630 (4.00E-125) | Ribosomal protein L4/L1 family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000568 | transport | details |
| CFinderADM000649 | poly(A) RNA binding RNA processing RNA degradation ATP-dependent RNA helicase activity cytosolic large ribosomal subunit Ribosome translation structural constituent of ribosome | details |
| CFinderADM000915 | diaminopimelate epimerase activity L-lysine biosynthesis VI pyruvate decarboxylation to acetyl CoA lysine biosynthetic process via diaminopimelate cell division Biosynthesis of amino acids Ubiquitin mediated proteolysis cytosolic large ribosomal subunit Ubiquitin_Proteasome_system, E3: RING structural constituent of ribosome translation Carbon metabolism Ribosome chloroplast stroma | details |
| CFinderADM001820 | brassinosteroid mediated signaling pathway Transcription_related, Transcription regulator: SNF2 poly(A) RNA binding phosphoprotein phosphatase activity RNA processing ATP-dependent RNA helicase activity protein dephosphorylation cytosolic large ribosomal subunit Spliceosome Ribosome translation structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |