CFinderADM000766's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CMP-3-deoxy-D-manno-octulosonate biosynthesis | 2.36E-06 | plantCyc |
| Lipopolysaccharide biosynthesis | 1.06E-05 | KEGG pathway |
| nucleotide binding | 0.000115186 | GO:0000166 |
| intracellular ribonucleoprotein complex | 0.000387701 | GO:0030529 |
| isomerase activity | 0.0007624 | GO:0016853 |
| RNA processing | 0.001000145 | GO:0006396 |
| carbohydrate binding | 0.002897995 | GO:0030246 |
| carbohydrate metabolic process | 0.009572693 | GO:0005975 |
| RNA binding | 0.016973018 | GO:0003723 |
| nucleic acid binding | 0.020964505 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001470 | - | - |
| CRO_T011116 | AT1G01355 (1.00E-09) | Putative endonuclease or glycosyl hydrolase |
| CRO_T012113 | AT3G54690 (6.00E-138) | SETH3|Sugar isomerase (SIS) family protein |
| CRO_T014141 | AT3G19090 (1.00E-24) | LARP6c|La related protein 6c |
| CRO_T016386 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001165 | cytoplasmic mRNA processing body assembly positive regulation of cytoplasmic mRNA processing body assembly deadenylation-independent decapping of nuclear-transcribed mRNA negative regulation of translation cytoplasmic mRNA processing body protein homodimerization activity Ubiquitin mediated proteolysis Ribosome translation structural constituent of ribosome | details |
| CFinderADM001776 | tRNA-type intron splice site recognition and cleavage phospholipid catabolic process tRNA-intron endonuclease complex tRNA-intron endonuclease activity Ubiquitin_Proteasome_system, E3: HECT phospholipase activity Ino80 complex O-acyltransferase activity RNA phosphodiester bond hydrolysis, endonucleolytic phosphatidylcholine acyl editing phospholipases protein ubiquitination involved in ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis ubiquitin-protein transferase activity nucleic acid binding | details |
| CFinderADM002170 | phospholipid catabolic process nucleotide biosynthetic process PRPP biosynthesis I nucleoside metabolic process ribose phosphate diphosphokinase activity phospholipase activity O-acyltransferase activity cytosol phosphatidylcholine acyl editing phospholipases nucleotidyltransferase activity actin binding RNA processing transferase activity, transferring glycosyl groups magnesium ion binding phosphorylation kinase activity catalytic activity plasmodesma RNA binding | details |
| CFinderADM002293 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycosyl compound metabolic process ribosomal small subunit assembly beta-glucosidase activity Glycerolipid metabolism cytosolic small ribosomal subunit carbohydrate metabolic process Ribosome translation structural constituent of ribosome | details |
| CFinderADM002304 | Ino80 complex transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery vacuole organization RNA export from nucleus membrane coat ubiquitin binding nuclear pore protein import into nucleus Lysosome vesicle-mediated transport formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular protein transport RNA transport Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |