CFinderADM000798's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyrimidine deoxyribonucleotides dephosphorylation | 7.25E-05 | plantCyc |
| pyrimidine deoxyribonucleotides de novo biosynthesis II | 8.96E-05 | plantCyc |
| superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) | 8.96E-05 | plantCyc |
| pyrimidine deoxyribonucleotides de novo biosynthesis I | 0.000163421 | plantCyc |
| RNA secondary structure unwinding | 0.001129437 | GO:0010501 |
| catalytic step 2 spliceosome | 0.001224377 | GO:0071013 |
| Starch and sucrose metabolism | 0.00405713 | KEGG pathway |
| vacuole | 0.004890283 | GO:0005773 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.01014637 | ubs family |
| ATP-dependent RNA helicase activity | 0.014371182 | GO:0004004 |
| metabolic process | 0.023477958 | GO:0008152 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000060 | AT5G51840 (5.00E-52) | unknown protein |
| CRO_T005347 | AT1G27340 (0.000000002) | LCR|LEAF CURLING RESPONSIVENESS |
| CRO_T005909 | AT3G10650 (1.00E-21) | AtNUP1; NUP1 |
| CRO_T019217 | AT4G29680 (0) | Alkaline-phosphatase-like family protein |
| CRO_T022495 | AT1G03610 (2.00E-105) | Protein of unknown function (DUF789) |
| CRO_T026475 | AT3G07810 (3.00E-14) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T029774 | AT4G33370 (0) | DEA(D/H)-box RNA helicase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000797 | ribonuclease inhibitor activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity regulation of RNA metabolic process regulation of circadian rhythm regulation of photomorphogenesis response to red light response to blue light pyrimidine deoxyribonucleotides dephosphorylation protein kinase regulator activity pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) regulation of protein kinase activity pyrimidine deoxyribonucleotides de novo biosynthesis I ethylene-activated signaling pathway negative regulation of catalytic activity Starch and sucrose metabolism methyltransferase activity plant-type cell wall vacuole Ubiquitin_Proteasome_system, E3 adaptor: F-box methylation kinase activity catalytic activity phosphorylation metabolic process | details |
| CFinderADM000923 | Transcription_related, Transcription factor: HSF Transcription_related, Transcription factor: NAC oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM000975 | transferase activity molybdate ion transmembrane transporter activity molybdate ion transport cellulose biosynthesis xyloglucan biosynthesis RNA polymerase II transcription factor binding pollen tube growth positive regulation of transcription from RNA polymerase II promoter pollen germination cell differentiation formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-GATA RNA polymerase II regulatory region sequence-specific DNA binding transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding transcription from RNA polymerase II promoter transcription factor complex zinc ion binding RNA secondary structure unwinding catalytic step 2 spliceosome chromatin binding ATP-dependent RNA helicase activity nucleic acid binding | details |
| CFinderADM001310 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit clathrin heavy chain binding transferase activity glycine hydroxymethyltransferase activity glycine metabolic process clathrin-mediated endocytosis L-serine metabolic process tetrahydrofolate interconversion folate polyglutamylation glycine biosynthesis pollen germination formation of glycosidic bonds, GlycosylTransferases: GTnc pollen tube growth xyloglucan biosynthesis cellulose biosynthesis folate transformations II photorespiration structural molecule activity Endocytosis catalytic step 2 spliceosome RNA secondary structure unwinding ATP-dependent RNA helicase activity intracellular protein transport pyridoxal phosphate binding Carbon metabolism nucleic acid binding | details |
Expression profiles
 Show details about module gene expression profiling |