CFinderADM000838's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-cysteine biosynthesis I | 5.03E-10 | plantCyc |
| cysteine synthase activity | 2.15E-09 | GO:0004124 |
| cysteine biosynthetic process from serine | 5.68E-09 | GO:0006535 |
| cellular amino acid biosynthetic process | 3.26E-08 | GO:0008652 |
| pyridoxal phosphate binding | 1.01E-05 | GO:0030170 |
| cytoplasm | 1.84E-05 | GO:0005737 |
| protein homotetramerization | 3.01E-05 | GO:0051289 |
| phylloquinone biosynthetic process | 3.77E-05 | GO:0042372 |
| acyl-CoA hydrolase activity | 3.80E-05 | GO:0047617 |
| monodehydroascorbate reductase (NADH) activity | 4.74E-05 | GO:0016656 |
| 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) | 6.09E-05 | plantCyc |
| transferase activity | 9.66E-05 | GO:0016740 |
| Carbon metabolism | 0.000104139 | KEGG pathway |
| cytoskeleton organization | 0.000112823 | GO:0007010 |
| thiamine pyrophosphate binding | 0.000178534 | GO:0030976 |
| organic phosphonate transport | 0.000200243 | GO:0015716 |
| organophosphate ester transport | 0.000200243 | GO:0015748 |
| organic phosphonate transmembrane-transporting ATPase activity | 0.000283719 | GO:0015416 |
| Ascorbate and aldarate metabolism | 0.000605335 | KEGG pathway |
| Peroxisome | 0.000605335 | KEGG pathway |
| Transcription_related, Transcription factor: WRKY | 0.000759879 | TF family |
| microtubule binding | 0.003090584 | GO:0008017 |
| cell redox homeostasis | 0.004321049 | GO:0045454 |
| flavin adenine dinucleotide binding | 0.006624756 | GO:0050660 |
| magnesium ion binding | 0.006664768 | GO:0000287 |
| catalytic activity | 0.022472157 | GO:0003824 |
| transmembrane transport | 0.034563627 | GO:0055085 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001484 | AT2G43750 (3.00E-26) | ACS1|ARABIDOPSIS CYSTEINE SYNTHASE 1; ATCS-B|CYSTEIN SYNTHASE-B; CPACS1|CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1; OASB|O-acetylserine (thiol) lyase B |
| CRO_T005385 | AT1G63940 (6.00E-47) | MDAR6|monodehydroascorbate reductase 6 |
| CRO_T009946 | AT1G14840 (0) | ATMAP70-4|microtubule-associated proteins 70-4 |
| CRO_T009983 | AT1G48320 (6.00E-49) | DHNAT1|DHNA-CoA thioesterase 1 |
| CRO_T018478 | AT2G43750 (8.00E-81) | ACS1|ARABIDOPSIS CYSTEINE SYNTHASE 1; ATCS-B|CYSTEIN SYNTHASE-B; CPACS1|CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1; OASB|O-acetylserine (thiol) lyase B |
| CRO_T022426 | AT5G17380 (0) | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
| CRO_T024010 | AT1G66950 (4.00E-104) | ABCG39|ATP-binding cassette G39; ATPDR11|PLEIOTROPIC DRUG RESISTANCE 11 |
| CRO_T033208 | AT1G24265 (5.00E-34) | Protein of unknown function (DUF1664) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000451 | pyrethrin I biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Peroxisome thiamine pyrophosphate binding Transcription_related, Transcription factor: WRKY benzoate biosynthesis I (CoA-dependent, β-oxidative) membrane hydrolase activity, acting on ester bonds magnesium ion binding catalytic activity transferase activity cytosol | details |
| CFinderADM000660 | Transcription_related, Transcription regulator: SOH1 tryptophan catabolic process to kynurenine formaldehyde oxidation II (glutathione-dependent) L-glutamate degradation I ternatin C3 biosynthesis glutamate dehydrogenase [NAD(P)+] activity arylformamidase activity delta4-3-oxosteroid 5beta-reductase activity 3-oxo-5-beta-steroid 4-dehydrogenase activity secondary metabolic process L-alanine degradation II (to D-lactate) 3-beta-hydroxy-delta5-steroid dehydrogenase activity acetaldehyde biosynthesis I cellulose biosynthesis pyruvate fermentation to ethanol II Transcription_related, Transcription factor: HSF cobalt ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) cellular amino acid metabolic process Transcription_related, Transcription factor: WRKY intracellular organelle plastoglobule oxidoreductase activity serine-type carboxypeptidase activity Transcription_related, Transcription factor: C2H2 coenzyme binding transferase activity, transferring acyl groups other than amino-acyl groups ATPase activity proteolysis involved in cellular protein catabolic process oxidation-reduction process vesicle-mediated transport signal transduction | details |
| CFinderADM000984 | toxin catabolic process glutathione metabolic process Glutathione metabolism glutathione transferase activity cytoplasm L-cysteine biosynthesis I Arachidonic acid metabolism cysteine biosynthetic process from serine cysteine synthase activity cellular amino acid biosynthetic process cell ubiquitin-dependent protein catabolic process protein disulfide oxidoreductase activity cell redox homeostasis electron carrier activity pyridoxal phosphate binding Carbon metabolism transferase activity | details |
| CFinderADM001688 | seryl-tRNA aminoacylation serine-tRNA ligase activity cytoskeleton organization Glutathione metabolism Aminoacyl-tRNA biosynthesis lipid binding microtubule binding transferase activity endoplasmic reticulum | details |
| CFinderADM001741 | cytoskeleton organization Transcription_related, Transcription factor: ERF microtubule binding endomembrane system vacuole endoplasmic reticulum membrane transport Golgi apparatus transcription, DNA-templated heme binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |