CFinderADM000849's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ESCRT I complex | 3.93E-06 | GO:0000813 |
| protein complex binding | 6.90E-06 | GO:0032403 |
| CTP synthase activity | 6.90E-06 | GO:0003883 |
| 'de novo' CTP biosynthetic process | 6.93E-06 | GO:0044210 |
| protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 1.21E-05 | GO:0043328 |
| glutamine metabolic process | 6.57E-05 | GO:0006541 |
| L-glutamine degradation I | 8.82E-05 | plantCyc |
| UTP and CTP de novo biosynthesis | 8.82E-05 | plantCyc |
| pyrimidine ribonucleotides interconversion | 0.000378711 | plantCyc |
| Pyrimidine metabolism | 0.000410442 | KEGG pathway |
| ATP-dependent RNA helicase activity | 0.001532003 | GO:0004004 |
| Endocytosis | 0.001628254 | KEGG pathway |
| ATP binding | 0.002803421 | GO:0005524 |
| Ubiquitin_Proteasome_system, E3: RING | 0.011727555 | ubs family |
| RNA binding | 0.012123585 | GO:0003723 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005208 | AT1G52330 (2.00E-31) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T021415 | AT1G77030 (0) | hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides; ATP-dependent helicases; nucleic acid binding; ATP binding; RNA binding; helicases |
| CRO_T021417 | AT4G05000 (1.00E-91) | VPS28-1|vacuolar protein sorting-associated protein 28 homolog 1 |
| CRO_T022140 | AT1G30820 (0) | CTP synthase family protein |
| CRO_T023299 | AT5G12310 (2.00E-42) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000399 | endoplasmic reticulum calcium ion binding Protein processing in endoplasmic reticulum unfolded protein binding protein folding ESCRT I complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc protein complex binding mannosyl-oligosaccharide 1,2-alpha-mannosidase activity endoplasmic reticulum lumen endoplasmic reticulum unfolded protein response protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway glycoprotein ERAD pathway N-glycan processing ER-associated ubiquitin-dependent protein catabolic process Protein export Endocytosis 2-alkenal reductase [NAD(P)] activity carbohydrate binding | details |
| CFinderADM002039 | transferase activity, transferring pentosyl groups phenylalanyl-tRNA aminoacylation Transcription_related, Transcription factor: NF-YB phenylalanine-tRNA ligase complex RNA binding phenylalanine-tRNA ligase activity L-glutamine degradation I L-histidine biosynthesis fatty-acyl-CoA binding cellular amino acid biosynthetic process Aminoacyl-tRNA biosynthesis Biosynthesis of amino acids protein heterodimerization activity ATP-dependent RNA helicase activity magnesium ion binding nucleus ATP binding | details |
| CFinderADM002241 | proton-transporting ATP synthase complex assembly transferase activity, transferring pentosyl groups L-glutamine degradation I L-histidine biosynthesis peptidyl-lysine monomethylation cellular amino acid biosynthetic process protein processing protein-lysine N-methyltransferase activity Biosynthesis of amino acids Plant-pathogen interaction ATP-dependent RNA helicase activity serine-type endopeptidase activity calcium ion binding RNA binding | details |
| CFinderADM002276 | transferase activity, transferring pentosyl groups folic acid-containing compound biosynthetic process L-glutamine degradation I L-histidine biosynthesis Folate biosynthesis tetrahydrofolate biosynthesis II cellular amino acid biosynthetic process Biosynthesis of amino acids ATP-dependent RNA helicase activity ligase activity RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |