CFinderADM000889's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| oxoglutarate dehydrogenase (NAD+) activity | 1.57E-05 | GO:0034602 |
| dihydrolipoyl dehydrogenase activity | 2.62E-05 | GO:0004148 |
| 2-oxoglutarate decarboxylation to succinyl-CoA | 1.00E-04 | plantCyc |
| glycine cleavage | 1.00E-04 | plantCyc |
| pyruvate decarboxylation to acetyl CoA | 1.00E-04 | plantCyc |
| 2-oxoisovalerate decarboxylation to isobutanoyl-CoA | 0.000131084 | plantCyc |
| endonuclease activity | 0.000565756 | GO:0004519 |
| cell | 0.000670493 | GO:0005623 |
| nucleic acid phosphodiester bond hydrolysis | 0.002408535 | GO:0090305 |
| cell redox homeostasis | 0.002408535 | GO:0045454 |
| small GTPase mediated signal transduction | 0.002408535 | GO:0007264 |
| flavin adenine dinucleotide binding | 0.004795516 | GO:0050660 |
| GTP binding | 0.010906193 | GO:0005525 |
| intracellular | 0.011482097 | GO:0005622 |
| Carbon metabolism | 0.012084662 | KEGG pathway |
| nucleic acid binding | 0.02829177 | GO:0003676 |
| hydrolase activity | 0.02829177 | GO:0016787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001435 | AT1G48030 (0) | mtLPD1|mitochondrial lipoamide dehydrogenase 1 |
| CRO_T002828 | - | - |
| CRO_T006856 | - | - |
| CRO_T015640 | AT1G18680 (3.00E-61) | HNH endonuclease domain-containing protein |
| CRO_T018784 | - | - |
| CRO_T026586 | AT5G60860 (2.00E-64) | AtRABA1f|RAB GTPase homolog A1F |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001026 | phosphoethanolamine N-methyltransferase activity phosphatidylcholine biosynthetic process phosphatidylcholine biosynthesis III phosphatidylcholine biosynthesis IV phosphatidylcholine biosynthesis II DNA-3-methyladenine glycosylase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc choline biosynthesis I mannan catabolic process mannan endo-1,4-beta-mannosidase activity base-excision repair nucleotidyltransferase activity Base excision repair Fructose and mannose metabolism Glycerophospholipid metabolism RNA degradation methylation | details |
| CFinderADM001104 | polyubiquitin binding plastid organization proteasome assembly pyruvate kinase activity potassium ion binding aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis IV (plant cytosol) Rubisco shunt TCA cycle II (plants and fungi) proteasome regulatory particle, base subcomplex Proteasome SNARE interactions in vesicular transport glycolytic process vesicle fusion exocytosis glycolysis I (from glucose 6-phosphate) response to salt stress SNAP receptor activity SNARE binding proteasome-mediated ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction SNARE complex magnesium ion binding vacuole GTP binding kinase activity Carbon metabolism intracellular hydrolase activity | details |
| CFinderADM001546 | oxoglutarate dehydrogenase (NAD+) activity dihydrolipoyl dehydrogenase activity catalytic step 1 spliceosome prespliceosome Prp19 complex post-mRNA release spliceosomal complex 2-oxoglutarate decarboxylation to succinyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA 2-oxoisovalerate decarboxylation to isobutanoyl-CoA precatalytic spliceosome spliceosomal complex assembly endonuclease activity catalytic step 2 spliceosome cell nucleic acid phosphodiester bond hydrolysis cell redox homeostasis flavin adenine dinucleotide binding Spliceosome Carbon metabolism nucleic acid binding | details |
| CFinderADM002155 | cellular response to heat DNA methylation on cytosine within a CHH sequence acetyl-CoA biosynthesis III (from citrate) superpathway of acetyl-CoA biosynthesis DNA (cytosine-5-)-methyltransferase activity serine O-acetyltransferase activity transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer cofactor binding C-5 methylation of cytosine Citrate cycle (TCA cycle) seleno-amino acid biosynthesis L-cysteine biosynthesis I cysteine biosynthetic process from serine chromatin binding Cysteine and methionine metabolism Plant hormone signal transduction Carbon metabolism metabolic process protein serine/threonine kinase activity protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |