CFinderADM000907's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity | 1.74E-05 | GO:0070205 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity | 1.74E-05 | GO:0070204 |
| cellular amino acid catabolic process | 1.96E-05 | GO:0009063 |
| menaquinone biosynthetic process | 1.96E-05 | GO:0009234 |
| catalytic activity | 3.27E-05 | GO:0003824 |
| 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) | 8.38E-05 | plantCyc |
| thiamine pyrophosphate binding | 9.55E-05 | GO:0030976 |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.000499462 | KEGG pathway |
| chloroplast part | 0.000741824 | GO:0044434 |
| metabolic process | 0.030457179 | GO:0008152 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001645 | AT1G68890 (0) | PHYLLO|PHYLLO |
| CRO_T004312 | AT3G09430 (4.00E-70) | unknown protein |
| CRO_T006286 | AT1G63130 (5.00E-23) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T006896 | AT1G21600 (1.00E-22) | PTAC6|plastid transcriptionally active 6 |
| CRO_T010974 | - | - |
| CRO_T023184 | AT5G22340 (6.00E-09) | unknown protein |
| CRO_T026556 | AT3G04590 (2.00E-25) | AHL14|AT-hook motif nuclear localized protein 14 |
| CRO_T029447 | AT1G65640 (1.00E-21) | DEG4|degradation of periplasmic proteins 4; DegP4|DegP protease 4 |
| CRO_T033274 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000606 | SNARE complex assembly regulation of vesicle-mediated transport cellular amino acid catabolic process menaquinone biosynthetic process chloroplast stroma lytic vacuole 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity magnesium chelatase activity 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) chlorophyll biosynthetic process thiamine pyrophosphate binding Porphyrin and chlorophyll metabolism Ubiquinone and other terpenoid-quinone biosynthesis chloroplast thylakoid SNARE binding Photosynthesis endosome Ribosome methyltransferase activity methylation GTP binding translation RNA binding hydrolase activity structural constituent of ribosome | details |
| CFinderADM001315 | (R)-2-hydroxyglutarate dehydrogenase activity 2-hydroxyglutarate dehydrogenase activity formation of glycosidic bonds, GlycosylTransferases: GTnc glucosyltransferase activity glycolipid metabolic process tRNA aminoacylation for protein translation thylakoid membrane organization photorespiration aminoacyl-tRNA ligase activity Ubiquitin_Proteasome_system, E2: UBC nitrogen compound metabolic process chloroplast organization chloroplast inner membrane rRNA processing protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process multicellular organism development Aminoacyl-tRNA biosynthesis Plant-pathogen interaction Ubiquitin mediated proteolysis embryo development ending in seed dormancy endomembrane system ligase activity ubiquitin protein ligase activity flavin adenine dinucleotide binding GTPase activity magnesium ion binding GTP binding calcium ion binding catalytic activity | details |
| CFinderADM001395 | formation of glycosidic bonds, GlycosylTransferases: GTnc glucosyltransferase activity growth glycolipid metabolic process RNA modification chloroplast part chloroplast organization endomembrane system metabolic process zinc ion binding | details |
| CFinderADM001853 | Carbon metabolism Vitamin B6 metabolism Transcription_related, Transcription regulator: LIM fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate choline biosynthesis I Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) 6-phosphofructokinase activity cytoplasm glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) phosphatase activity FMN binding MAPK signaling pathway - plant dephosphorylation intracellular signal transduction ATP binding oxidoreductase activity | details |
Expression profiles
 Show details about module gene expression profiling |