CFinderADM000977's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| molybdate ion transport | 1.79E-05 | GO:0015689 |
| ceramide metabolic process | 1.79E-05 | GO:0006672 |
| nucleotide-sugar metabolic process | 1.79E-05 | GO:0009225 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 2.12E-05 | GO:0016811 |
| UDP-glucose 6-dehydrogenase activity | 2.12E-05 | GO:0003979 |
| molybdate ion transmembrane transporter activity | 2.12E-05 | GO:0015098 |
| dTDP-glucose 4,6-dehydratase activity | 2.12E-05 | GO:0008460 |
| dTDP-L-rhamnose biosynthesis I | 2.63E-05 | plantCyc |
| dTDP-L-rhamnose biosynthesis II | 2.63E-05 | plantCyc |
| UDP-α-D-glucuronate biosynthesis (from UDP-glucose) | 2.63E-05 | plantCyc |
| UDP-L-rhamnose biosynthesis | 2.63E-05 | plantCyc |
| UDP-D-xylose biosynthesis | 4.56E-05 | plantCyc |
| Transcription_related, Transcription factor: C2C2-GATA | 6.49E-05 | TF family |
| RNA polymerase II transcription factor binding | 7.45E-05 | GO:0001085 |
| UDP-sugars interconversion | 8.32E-05 | plantCyc |
| positive regulation of transcription from RNA polymerase II promoter | 0.000121365 | GO:0045944 |
| RNA polymerase II regulatory region sequence-specific DNA binding | 0.000123304 | GO:0000977 |
| transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 0.000123304 | GO:0001228 |
| cell differentiation | 0.000135579 | GO:0030154 |
| transcription factor complex | 0.000156765 | GO:0005667 |
| transcription from RNA polymerase II promoter | 0.000178253 | GO:0006366 |
| Sphingolipid metabolism | 0.000218907 | KEGG pathway |
| chromatin binding | 0.000576148 | GO:0003682 |
| NAD binding | 0.001375233 | GO:0051287 |
| Amino sugar and nucleotide sugar metabolism | 0.001766547 | KEGG pathway |
| Pentose and glucuronate interconversions | 0.001766547 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010659 | AT3G54810 (4.00E-34) | BME3|BLUE MICROPYLAR END 3; BME3-ZF|BLUE MICROPYLAR END 3-ZINC FINGER; GATA8|GATA TRANSCRIPTION FACTOR 8 |
| CRO_T017000 | AT3G29360 (1.00E-81) | UGD2|UDP-glucose dehydrogenase 2 |
| CRO_T018915 | AT4G22330 (9.00E-118) | ATCES1|Alkaline phytoceramidase (aPHC) |
| CRO_T019996 | AT1G53500 (0) | ATMUM4|MUCILAGE-MODIFIED 4; ATRHM2|RHAMNOSE BIOSYNTHESIS 2 |
| CRO_T028324 | AT1G64650 (0) | Major facilitator superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000942 | dTDP-glucose 4,6-dehydratase activity nucleotide-sugar metabolic process response to desiccation dTDP-L-rhamnose biosynthesis I dTDP-L-rhamnose biosynthesis II UDP-L-rhamnose biosynthesis O-acetyltransferase activity cell wall organization or biogenesis Amino sugar and nucleotide sugar metabolism Transcription_related, Transcription factor: bHLH Golgi apparatus integral component of membrane | details |
| CFinderADM000975 | transferase activity molybdate ion transmembrane transporter activity molybdate ion transport cellulose biosynthesis xyloglucan biosynthesis RNA polymerase II transcription factor binding pollen tube growth positive regulation of transcription from RNA polymerase II promoter pollen germination cell differentiation formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: C2C2-GATA RNA polymerase II regulatory region sequence-specific DNA binding transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding transcription from RNA polymerase II promoter transcription factor complex zinc ion binding RNA secondary structure unwinding catalytic step 2 spliceosome chromatin binding ATP-dependent RNA helicase activity nucleic acid binding | details |
| CFinderADM000976 | UDP-α-D-glucuronate biosynthesis (from UDP-glucose) UDP-glucose 6-dehydrogenase activity molybdate ion transmembrane transporter activity UDP-D-xylose biosynthesis molybdate ion transport UDP-sugars interconversion RNA polymerase II transcription factor binding hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C2C2-GATA transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding RNA polymerase II regulatory region sequence-specific DNA binding transcription factor complex cell differentiation positive regulation of transcription from RNA polymerase II promoter transcription from RNA polymerase II promoter xyloglucan metabolic process cell wall biogenesis xyloglucan:xyloglucosyl transferase activity chromatin binding Pentose and glucuronate interconversions NAD binding apoplast hydrolase activity, hydrolyzing O-glycosyl compounds cell wall organization cell wall | details |
Expression profiles
 Show details about module gene expression profiling |