CFinderADM001020's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| thiosulfate disproportionation IV (rhodanese) | 2.36E-06 | plantCyc |
| Sulfur metabolism | 3.60E-05 | KEGG pathway |
| transferase activity | 0.017894104 | GO:0016740 |
| nucleic acid binding | 0.017894104 | GO:0003676 |
| integral component of membrane | 0.018006186 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001057 | AT1G16560 (3.00E-67) | Per1-like family protein |
| CRO_T004023 | - | - |
| CRO_T012888 | AT1G16460 (5.00E-132) | ATMST2|MERCAPTOPYRUVATE SULFURTRANSFERASE 2; ATRDH2|rhodanese homologue 2; ST2|SULFURTRANSFERASE 2 |
| CRO_T014904 | AT4G26000 (4.00E-78) | PEP|PEPPER |
| CRO_T023513 | AT5G65520 (7.00E-36) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000344 | nucleic acid binding | details |
| CFinderADM000468 | thiosulfate disproportionation IV (rhodanese) resolution of recombination intermediates Golgi vesicle budding sister chromatid cohesion Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation phospholipid translocation double-strand break repair via homologous recombination COP9 signalosome Smc5-Smc6 complex Sulfur metabolism phospholipid-translocating ATPase activity Phenylpropanoid biosynthesis RNA processing coenzyme binding Golgi membrane Spliceosome trans-Golgi network magnesium ion binding plasmodesma | details |
| CFinderADM000535 | acireductone synthase activity 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity methylthioribulose 1-phosphate dehydratase activity 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity sodium:proton antiporter activity potassium ion homeostasis L-methionine biosynthetic process from S-adenosylmethionine S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-methionine biosynthetic process from methylthioadenosine sodium ion transmembrane transport regulation of pH Cysteine and methionine metabolism response to salt stress hydrogen ion transmembrane transport magnesium ion binding dephosphorylation vacuolar membrane | details |
| CFinderADM000537 | DNA-directed RNA polymerase I complex RNA polymerase I activity Purine metabolism nucleic acid binding | details |
| CFinderADM000557 | Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Protein processing in endoplasmic reticulum nucleic acid binding hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc xyloglucan metabolic process cell wall biogenesis xyloglucan:xyloglucosyl transferase activity hydrolase activity, hydrolyzing O-glycosyl compounds cell wall organization apoplast Ribosome cell wall | details |
| CFinderADM000597 | Ubiquitin_Proteasome_system, DUB: USP proteolysis chloroplast stroma | details |
| CFinderADM000790 | nucleic acid binding | details |
| CFinderADM001077 | Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM001297 | Amyotrophic lateral sclerosis (ALS) base-excision repair, AP site formation DNA N-glycosylase activity queuine tRNA-ribosyltransferase activity DNA-(apurinic or apyrimidinic site) lyase activity queuosine biosynthetic process protein import into nucleus, translocation ribosomal protein import into nucleus protein import into nucleus, docking mitochondrial outer membrane translocase complex nuclear membrane nuclear periphery protein import into mitochondrial matrix NLS-bearing protein import into nucleus protein channel activity Base excision repair tRNA modification nuclear localization sequence binding Ran GTPase binding 4 iron, 4 sulfur cluster binding protein transporter activity RNA transport nucleic acid binding DNA binding | details |
| CFinderADM001317 | Transcription_related, Transcription factor: Trihelix transcription, DNA-templated transcription factor activity, sequence-specific DNA binding nucleic acid binding | details |
| CFinderADM002259 | Transcription_related, Transcription regulator: TRAF Golgi organization Ubiquitin_Proteasome_system, E3 adaptor: BTB cytosolic large ribosomal subunit Golgi apparatus Plant hormone signal transduction translation Ribosome nucleic acid binding structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |