CFinderADM001029's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.001897902 | kinase family |
| Ubiquitin_Proteasome_system, E3: U-box | 0.00670304 | ubs family |
| protein ubiquitination | 0.010772877 | GO:0016567 |
| ligase activity | 0.014852721 | GO:0016874 |
| ubiquitin-protein transferase activity | 0.014852721 | GO:0004842 |
| ATP binding | 0.023278674 | GO:0005524 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.02375384 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001532 | AT4G30490 (0) | AFG1-like ATPase family protein |
| CRO_T010704 | - | - |
| CRO_T015296 | AT4G33540 (7.00E-86) | metallo-beta-lactamase family protein |
| CRO_T015503 | AT5G15080 (1.00E-142) | Protein kinase superfamily protein |
| CRO_T028015 | AT5G14970 (4.00E-26) | unknown protein |
| CRO_T028519 | AT1G24330 (0) | ARM repeat superfamily protein |
| CRO_T030770 | AT4G25680 (8.00E-14) | PPPDE putative thiol peptidase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000291 | oxidation-reduction process Glycerolipid metabolism sporopollenin precursors biosynthesis diacylglycerol and triacylglycerol biosynthesis acyl-CoA metabolic process neutral lipid biosynthetic process tetrahydrofolate metabolic process tyrosine biosynthetic process geranylgeranyl diphosphate biosynthetic process geranyl diphosphate biosynthetic process inositol trisphosphate metabolic process farnesyl diphosphate biosynthetic process prephenate dehydrogenase (NADP+) activity sarcosine oxidase activity dioxygenase activity phospholipid:diacylglycerol acyltransferase activity acyl-CoA hydrolase activity prephenate dehydrogenase activity inositol tetrakisphosphate 1-kinase activity inositol-1,3,4-trisphosphate 5-kinase activity inositol-1,3,4-trisphosphate 6-kinase activity cinnamoyl-CoA reductase activity geranyltranstransferase activity farnesyltranstransferase activity sporopollenin biosynthetic process acyl-CoA hydrolysis lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) L-tyrosine biosynthesis II proanthocyanidins biosynthesis from flavanols Glycine, serine and threonine metabolism sexual reproduction triglyceride biosynthetic process carotenoid biosynthetic process dimethylallyltranstransferase activity diacylglycerol O-acyltransferase activity anthocyanin biosynthesis polyisoprenoid biosynthesis trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Transcription_related, Transcription factor: NF-YA inositol pyrophosphates biosynthesis Nicotinate and nicotinamide metabolism O-acyltransferase activity Cytochrome_P450, Cytochrome P450: CYP81D potassium ion transmembrane transporter activity indole glucosinolate metabolic process phospholipid remodeling (phosphatidylcholine, yeast) defense response to other organism Fatty acid elongation extracellular region metal ion binding 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) sesamin biosynthesis stromule cutin biosynthesis potassium ion transmembrane transport transmembrane transporter activity plant-type cell wall organization Inositol phosphate metabolism Terpenoid backbone biosynthesis coenzyme binding suberin monomers biosynthesis Biosynthesis of amino acids secondary metabolite biosynthetic process defense response oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | details |
| CFinderADM001323 | Biotin metabolism biotin biosynthesis from 8-amino-7-oxononanoate I dethiobiotin synthase activity adenosylmethionine-8-amino-7-oxononanoate transaminase activity biotin biosynthetic process heat shock protein binding response to heat metal ion binding identical protein binding unfolded protein binding protein folding pyridoxal phosphate binding chloroplast envelope chloroplast thylakoid membrane mitochondrion | details |
Expression profiles
 Show details about module gene expression profiling |