CFinderADM001035's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| post-embryonic root development | 6.93E-06 | GO:0048528 |
| riboflavin synthase activity | 1.03E-05 | GO:0004746 |
| riboflavin biosynthetic process | 4.50E-05 | GO:0009231 |
| MAPK signaling pathway - yeast | 5.00E-05 | KEGG pathway |
| Riboflavin metabolism | 5.00E-05 | KEGG pathway |
| protein domain specific binding | 7.76E-05 | GO:0019904 |
| calcium ion binding | 0.005838569 | GO:0005509 |
| oxidoreductase activity | 0.016284281 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001350 | AT2G20690 (1.00E-10) | lumazine-binding family protein |
| CRO_T014500 | - | - |
| CRO_T019201 | - | - |
| CRO_T019266 | - | - |
| CRO_T023236 | AT1G78220 (3.00E-67) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000296 | post-embryonic root development Transcription_related, Transcription regulator: LIM Mitophagy - animal PPAR signaling pathway MAPK signaling pathway - yeast anaphase-promoting complex binding ubiquitin-protein transferase activator activity protein domain specific binding 3'-5' exonuclease activity ATP-dependent peptidase activity regulation of catalytic activity nucleic acid phosphodiester bond hydrolysis Ubiquitin mediated proteolysis Ubiquitin_Proteasome_system, E3 adaptor: DWD calcium ion binding proteolysis binding RNA binding | details |
| CFinderADM000310 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc post-embryonic root development trehalose metabolic process alpha,alpha-trehalase activity Transcription_related, Transcription regulator: LIM pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process cytidylate kinase activity uridylate kinase activity nucleotide phosphorylation CMP phosphorylation pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis protein domain specific binding MAPK signaling pathway - yeast Pyrimidine metabolism pyrimidine ribonucleotides interconversion cytosol nucleus Starch and sucrose metabolism apoplast calcium ion binding hydrolase activity | details |
| CFinderADM000332 | riboflavin synthase activity Riboflavin metabolism riboflavin biosynthetic process oxidoreductase activity | details |
| CFinderADM000542 | binding | details |
| CFinderADM000623 | borate uptake transmembrane transporter activity arsenite transmembrane transporter activity DNA ligase activity Transcription_related, Transcription regulator: LIM lateral plasma membrane borate transmembrane transport post-embryonic root development arsenite transport response to boron-containing substance hydroxymethylglutaryl-CoA reductase (NADPH) activity coenzyme A metabolic process response to arsenic-containing substance Non-homologous end-joining cytidylate kinase activity uridylate kinase activity peroxisomal membrane pyrimidine nucleotide biosynthetic process sterol biosynthetic process xylan biosynthetic process CMP phosphorylation mevalonate pathway I pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis 'de novo' pyrimidine nucleobase biosynthetic process MAPK signaling pathway - yeast cellular macromolecule biosynthetic process protein domain specific binding nucleotide phosphorylation glycerol transport isoprenoid biosynthetic process water transport cellular water homeostasis glycerol channel activity water channel activity Pyrimidine metabolism pyrimidine ribonucleotides interconversion single-organism process Terpenoid backbone biosynthesis NADP binding DNA repair cytosol apoplast endoplasmic reticulum membrane nucleus integral component of plasma membrane calcium ion binding | details |
| CFinderADM000963 | post-embryonic root development heterochromatin assembly MAPK signaling pathway - yeast transcription regulatory region sequence-specific DNA binding chromatin silencing complex chromatin chromatin silencing protein domain specific binding transferase activity, transferring hexosyl groups chromatin binding methyltransferase activity methylation calcium ion binding metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |