CFinderADM001057's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: SOH1 | 7.07E-07 | TF family |
| tryptophan catabolic process to kynurenine | 6.91E-06 | GO:0019441 |
| glutamate dehydrogenase [NAD(P)+] activity | 1.28E-05 | GO:0004353 |
| arylformamidase activity | 1.28E-05 | GO:0004061 |
| formaldehyde oxidation II (glutathione-dependent) | 2.42E-05 | plantCyc |
| L-glutamate degradation I | 2.42E-05 | plantCyc |
| L-alanine degradation II (to D-lactate) | 3.45E-05 | plantCyc |
| acetaldehyde biosynthesis I | 0.000172037 | plantCyc |
| pyruvate fermentation to ethanol II | 0.000173331 | plantCyc |
| cobalt ion binding | 0.000192283 | GO:0050897 |
| cellular amino acid metabolic process | 0.000218085 | GO:0006520 |
| oxidation-reduction process | 0.002494374 | GO:0055114 |
| ATPase activity, coupled to transmembrane movement of substances | 0.003197285 | GO:0042626 |
| transporter activity | 0.004256686 | GO:0005215 |
| Carbon metabolism | 0.008328376 | KEGG pathway |
| transport | 0.008362711 | GO:0006810 |
| transmembrane transport | 0.012467745 | GO:0055085 |
| oxidoreductase activity | 0.027007916 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006259 | AT1G64710 (3.00E-26) | GroES-like zinc-binding dehydrogenase family protein |
| CRO_T007387 | AT1G32450 (1.00E-146) | NPF7.3|NRT1/ PTR family 7.3; NRT1.5|nitrate transporter 1.5 |
| CRO_T016895 | AT3G03910 (2.00E-176) | GDH3|glutamate dehydrogenase 3 |
| CRO_T021146 | AT2G36380 (2.00E-39) | ABCG34|ATP-binding cassette G34; ATPDR6|PLEIOTROPIC DRUG RESISTANCE 6 |
| CRO_T026945 | AT4G35220 (1.00E-35) | Cyclase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000131 | Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation ATPase activity, coupled to transmembrane movement of substances ATP binding transmembrane transport | details |
| CFinderADM000660 | Transcription_related, Transcription regulator: SOH1 tryptophan catabolic process to kynurenine formaldehyde oxidation II (glutathione-dependent) L-glutamate degradation I ternatin C3 biosynthesis glutamate dehydrogenase [NAD(P)+] activity arylformamidase activity delta4-3-oxosteroid 5beta-reductase activity 3-oxo-5-beta-steroid 4-dehydrogenase activity secondary metabolic process L-alanine degradation II (to D-lactate) 3-beta-hydroxy-delta5-steroid dehydrogenase activity acetaldehyde biosynthesis I cellulose biosynthesis pyruvate fermentation to ethanol II Transcription_related, Transcription factor: HSF cobalt ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) cellular amino acid metabolic process Transcription_related, Transcription factor: WRKY intracellular organelle plastoglobule oxidoreductase activity serine-type carboxypeptidase activity Transcription_related, Transcription factor: C2H2 coenzyme binding transferase activity, transferring acyl groups other than amino-acyl groups ATPase activity proteolysis involved in cellular protein catabolic process oxidation-reduction process vesicle-mediated transport signal transduction | details |
| CFinderADM001647 | protein catabolic process aspartic-type endopeptidase activity cellular response to gravity proteolysis tubulin complex formaldehyde oxidation II (glutathione-dependent) Phagosome response to cadmium ion microtubule-based process acetaldehyde biosynthesis I pyruvate fermentation to ethanol II structural constituent of cytoskeleton cobalt ion binding lipid metabolic process microtubule GTPase activity apoplast Protein processing in endoplasmic reticulum GTP binding cell wall plasmodesma oxidoreductase activity | details |
Expression profiles
 Show details about module gene expression profiling |