CFinderADM001100's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| arginine catabolic process | 3.47E-06 | GO:0006527 |
| putrescine biosynthesis II | 4.95E-06 | plantCyc |
| arginine decarboxylase activity | 5.13E-06 | GO:0008792 |
| spermidine biosynthetic process | 2.08E-05 | GO:0008295 |
| Arginine and proline metabolism | 0.000109146 | KEGG pathway |
| ribosome biogenesis | 0.000190127 | GO:0042254 |
| anchored component of plasma membrane | 0.002044494 | GO:0046658 |
| GTPase activity | 0.00208244 | GO:0003924 |
| electron carrier activity | 0.00208244 | GO:0009055 |
| GTP binding | 0.00500674 | GO:0005525 |
| mitochondrion | 0.032280385 | GO:0005739 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000987 | AT4G10620 (3.00E-156) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T009796 | AT2G16500 (0) | ADC1|arginine decarboxylase 1 |
| CRO_T029504 | AT1G10340 (1.00E-17) | Ankyrin repeat family protein |
| CRO_T032279 | AT5G25090 (8.00E-23) | ENODL13|early nodulin-like protein 13 |
| CRO_T033493 | AT1G09820 (4.00E-16) | Pentatricopeptide repeat (PPR-like) superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000739 | tRNA export from nucleus Protein_kinases_phosphatases, PPC:4.1.3: MAP2K CURI complex UTP-C complex MAP kinase kinase activity receptor signaling protein serine/threonine kinase activity rRNA processing MAPK cascade small-subunit processome helicase activity protein binding MAPK signaling pathway - plant Ribosome biogenesis in eukaryotes ATP binding nucleic acid binding | details |
| CFinderADM001879 | putrescine biosynthesis II Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX arginine decarboxylase activity arginine catabolic process cellular protein localization spermidine biosynthetic process Arginine and proline metabolism Insulin signaling pathway 3'-5' exonuclease activity cellular transition metal ion homeostasis ribosome biogenesis metal ion transport exocytosis response to salt stress exocyst transition metal ion binding nucleic acid phosphodiester bond hydrolysis signal transduction GTPase activity GTP binding protein kinase activity nucleic acid binding | details |
| CFinderADM001880 | ribosome biogenesis cell division embryo development ending in seed dormancy microtubule protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: F-box ubiquitin-protein transferase activity GTPase activity GTP binding | details |
| CFinderADM002193 | putrescine biosynthesis II arginine decarboxylase activity arginine catabolic process cellular protein localization Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase spermidine biosynthetic process Arginine and proline metabolism Insulin signaling pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 exocyst exocytosis response to salt stress signal transduction methyltransferase activity methylation protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM002265 | regulation of production of siRNA involved in chromatin silencing by small RNA DNA-directed RNA polymerase V complex mismatch repair complex RNA-directed DNA methylation Mismatch repair mismatched DNA binding protein homodimerization activity | details |
| CFinderADM002266 | regulation of production of siRNA involved in chromatin silencing by small RNA DNA-directed RNA polymerase V complex mismatch repair complex RNA-directed DNA methylation Mismatch repair mismatched DNA binding protein homodimerization activity | details |
Expression profiles
 Show details about module gene expression profiling |