CFinderADM001124's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| histone monoubiquitination | 4.79E-06 | GO:0010390 |
| regulation of G2/M transition of mitotic cell cycle | 4.79E-06 | GO:0010389 |
| seed dormancy process | 4.79E-06 | GO:0010162 |
| histone H2B ubiquitination | 4.79E-06 | GO:0033523 |
| S-methyl-L-methionine cycle | 6.55E-06 | plantCyc |
| selenocysteine methyltransferase activity | 6.91E-06 | GO:0016205 |
| response to selenium ion | 7.66E-06 | GO:0010269 |
| L-methionine biosynthesis II | 1.18E-05 | plantCyc |
| defense response to fungus, incompatible interaction | 3.83E-05 | GO:0009817 |
| leaf morphogenesis | 0.000136053 | GO:0009965 |
| cell growth | 0.000136053 | GO:0016049 |
| vegetative to reproductive phase transition of meristem | 0.000229595 | GO:0010228 |
| Basal transcription factors | 0.000293826 | KEGG pathway |
| Cysteine and methionine metabolism | 0.000293826 | KEGG pathway |
| cell division | 0.000599765 | GO:0051301 |
| protein homodimerization activity | 0.002298004 | GO:0042803 |
| ligase activity | 0.002585854 | GO:0016874 |
| ubiquitin-protein transferase activity | 0.002964837 | GO:0004842 |
| methylation | 0.005644465 | GO:0032259 |
| Ubiquitin_Proteasome_system, E3: RING | 0.011727555 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006761 | AT3G22740 (7.00E-132) | HMT3|homocysteine S-methyltransferase 3 |
| CRO_T017744 | AT1G32750 (2.00E-51) | HAC13|HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13; HAF1|HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1; TAF1|TBP-ASSOCIATED FACTOR 1 |
| CRO_T018828 | AT5G04910 (1.00E-51) | unknown protein |
| CRO_T025203 | AT1G55250 (9.00E-51) | HUB2|histone mono-ubiquitination 2 |
| CRO_T032387 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001125 | developmental vegetative growth Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family purine deoxyribonucleosides salvage adenylate kinase activity Wnt signaling pathway nucleotide phosphorylation regulation of cell shape adenosine ribonucleotides de novo biosynthesis MAPK signaling pathway - yeast Endocytosis translational initiation peptidyl-serine phosphorylation cellular process mRNA surveillance pathway Ubiquitin mediated proteolysis ATPase activity translation initiation factor activity Ubiquitin_Proteasome_system, E3 adaptor: F-box Purine metabolism nucleus ATP binding | details |
| CFinderADM001630 | response to starvation cell periphery hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Ubiquitin_Proteasome_system, E2: UBC pectinesterase activity pectinesterase inhibitor activity Basal transcription factors membrane vesicle-mediated transport ligase activity Pentose and glucuronate interconversions Ubiquitin mediated proteolysis cell wall organization cytoplasm | details |
| CFinderADM001839 | regulation of G2/M transition of mitotic cell cycle histone monoubiquitination histone H2B ubiquitination seed dormancy process Ubiquitin_Proteasome_system, E3: RING defense response to fungus, incompatible interaction cytokinesis by cell plate formation cell plate cell growth leaf morphogenesis vegetative to reproductive phase transition of meristem protein peptidyl-prolyl isomerization cell division Endocytosis small GTPase mediated signal transduction protein folding peptidyl-prolyl cis-trans isomerase activity protein homodimerization activity ligase activity ubiquitin-protein transferase activity endosome GTP binding plasmodesma hydrolase activity | details |
| CFinderADM001938 | Transcription_related, Transcription regulator: IWS1 GDP-mannose biosynthesis Transcription_related, Transcription regulator: Jumonji L-ascorbate biosynthesis I (L-galactose pathway) Basal transcription factors Fructose and mannose metabolism nucleotidyltransferase activity biosynthetic process Peroxisome cellular process DNA binding cytosol | details |
| CFinderADM002130 | ubiquitin-protein transferase activity regulation of G2/M transition of mitotic cell cycle seed dormancy process histone monoubiquitination histone H2B ubiquitination argininosuccinate metabolic process argininosuccinate synthase activity urea cycle defense response to fungus, incompatible interaction Pwp2p-containing subcomplex of 90S preribosome regulation of signal transduction leaf morphogenesis arginine biosynthetic process cell growth vegetative to reproductive phase transition of meristem snoRNA binding zinc ion binding maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cytoplasm cell division small-subunit processome protein homodimerization activity Biosynthesis of amino acids Ribosome biogenesis in eukaryotes ligase activity Ubiquitin_Proteasome_system, E3: RING binding mitochondrion | details |
Expression profiles
 Show details about module gene expression profiling |