CFinderADM001134's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| structural constituent of ribosome | 1.67E-05 | GO:0003735 |
| Transcription_related, Transcription factor: LOB | 0.000131618 | TF family |
| cytoplasmic translation | 0.000467106 | GO:0002181 |
| rRNA binding | 0.001022247 | GO:0019843 |
| cytosolic large ribosomal subunit | 0.004167484 | GO:0022625 |
| Ribosome | 0.009378814 | KEGG pathway |
| translation | 0.015182345 | GO:0006412 |
| transmembrane transport | 0.015182345 | GO:0055085 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T015225 | AT4G19070 (9.00E-18) | Putative membrane lipoprotein |
| CRO_T016900 | AT4G26180 (2.00E-27) | CoAc2|CoA Carrier 2 |
| CRO_T020760 | AT3G60850 (0) | unknown protein |
| CRO_T024272 | AT1G33120 (2.00E-90) | Ribosomal protein L6 family |
| CRO_T033038 | AT3G49470 (5.00E-43) | NACA2|nascent polypeptide-associated complex subunit alpha-like protein 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001106 | aspartate carbamoyltransferase activity UMP biosynthesis I pyrimidine ribonucleotide biosynthetic process urea cycle 'de novo' pyrimidine nucleobase biosynthetic process single-organism developmental process cellular amino acid metabolic process Pyrimidine metabolism amino acid binding transmembrane transport translation structural constituent of ribosome chloroplast stroma | details |
| CFinderADM001107 | aspartate carbamoyltransferase activity UMP biosynthesis I pyrimidine ribonucleotide biosynthetic process urea cycle 'de novo' pyrimidine nucleobase biosynthetic process Pyrimidine metabolism cellular amino acid metabolic process Transcription_related, Transcription factor: GRAS amino acid binding sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding transmembrane transport translation transcription, DNA-templated structural constituent of ribosome chloroplast envelope chloroplast stroma regulation of transcription, DNA-templated | details |
| CFinderADM001608 | structural constituent of ribosome Cdc73/Paf1 complex histone modification transcription elongation from RNA polymerase II promoter MAPK signaling pathway - yeast cytoplasmic translation rRNA binding Ribosome transmembrane transport translation | details |
| CFinderADM002050 | Ubiquitin_Proteasome_system, E3: RING Transcription_related, Transcription factor: LOB proteasome-mediated ubiquitin-dependent protein catabolic process protein ubiquitination ubiquitin protein ligase activity | details |
Expression profiles
 Show details about module gene expression profiling |