CFinderADM001176's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| retromer complex | 9.30E-05 | GO:0030904 |
| retrograde transport, endosome to Golgi | 0.000114948 | GO:0042147 |
| MAPK signaling pathway | 0.000354496 | KEGG pathway |
| protein transporter activity | 0.001261201 | GO:0008565 |
| intracellular protein transport | 0.003186133 | GO:0006886 |
| Endocytosis | 0.004195742 | KEGG pathway |
| endosome | 0.004532814 | GO:0005768 |
| calcium ion binding | 0.006520538 | GO:0005509 |
| Oxidative phosphorylation | 0.013015555 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006947 | - | - |
| CRO_T007319 | AT3G15770 (1.00E-20) | unknown protein |
| CRO_T017850 | AT5G55990 (4.00E-113) | CBL2|calcineurin B-like protein 2 |
| CRO_T020145 | AT5G53530 (4.00E-70) | VPS26A|vacuolar protein sorting 26A |
| CRO_T027144 | AT5G46150 (1.00E-79) | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein |
| CRO_T028723 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001253 | mitochondrial respiratory chain complex III mitochondrial electron transport, ubiquinol to cytochrome c Oxidative phosphorylation phragmoplast microtubule organization histone ubiquitination mitochondrial respiratory chain complex III assembly HAUS complex spindle spindle assembly phragmoplast ubiquinol-cytochrome-c reductase activity Ubiquitin_Proteasome_system, E2: UBC aerobic respiration aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation protein polyubiquitination ubiquitin protein ligase binding proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair hydrogen ion transmembrane transport Ubiquitin mediated proteolysis NADH dehydrogenase (ubiquinone) activity ubiquitin protein ligase activity ligase activity Ribosome translation structural constituent of ribosome | details |
| CFinderADM001284 | Kdo transfer to lipid IVA I formation of glycosidic bonds, GlycosylTransferases: GTnc RNA polymerase II transcription factor activity, sequence-specific DNA binding TGF-beta signaling pathway Transcription_related, Transcription factor: E2F-DP Lipopolysaccharide biosynthesis Cell cycle transcription factor complex regulation of transcription from RNA polymerase II promoter Oxidative phosphorylation transcription, DNA-templated DNA binding | details |
| CFinderADM001285 | Kdo transfer to lipid IVA I formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: E2F-DP TGF-beta signaling pathway RNA polymerase II transcription factor activity, sequence-specific DNA binding Lipopolysaccharide biosynthesis Cell cycle transcription factor complex translational initiation regulation of transcription from RNA polymerase II promoter helicase activity translation initiation factor activity Spliceosome Oxidative phosphorylation transcription, DNA-templated DNA binding | details |
| CFinderADM001569 | diacylglycerol cholinephosphotransferase activity ethanolaminephosphotransferase activity phosphatidyltransferase activity phosphatidylethanolamine biosynthetic process diacylglycerol biosynthesis (PUFA enrichment in oilseed) phosphatidylcholine biosynthesis I phosphatidylcholine biosynthesis II phosphatidylethanolamine biosynthesis II choline biosynthesis III protein stabilization COPI vesicle coat chaperone binding protein import into mitochondrial matrix retrograde vesicle-mediated transport, Golgi to ER Glycerophospholipid metabolism protein transport triacylglycerol degradation lipid metabolic process protein folding Golgi apparatus plasmodesma | details |
| CFinderADM001692 | histone ubiquitination mitochondrial respiratory chain complex III mitochondrial electron transport, ubiquinol to cytochrome c cytoplasmic microtubule organization Ubiquitin_Proteasome_system, E2: UBC protein polyubiquitination microtubule-severing ATPase activity protein transport proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair ubiquitin protein ligase binding helicase activity protein binding ligase activity ubiquitin protein ligase activity Ubiquitin mediated proteolysis ATP binding Oxidative phosphorylation Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |