CFinderADM001203's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to pH | 3.47E-06 | GO:0009268 |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.000109146 | kinase family |
| signal transduction | 0.001448162 | GO:0007165 |
| protein phosphorylation | 0.033955982 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004255 | AT3G05240 (2.00E-83) | MEF19|mitochondrial editing factor 19 |
| CRO_T013275 | AT3G56500 (2.00E-05) | serine-rich protein-related |
| CRO_T015761 | AT1G51580 (1.00E-18) | RNA-binding KH domain-containing protein |
| CRO_T021927 | AT5G58130 (3.00E-12) | ROS3|REPRESSOR OF SILENCING 3 |
| CRO_T028258 | AT2G30360 (4.00E-145) | CIPK11|CBL-INTERACTING PROTEIN KINASE 11; PKS5|PROTEIN KINASE SOS2-LIKE 5; SIP4|SOS3-interacting protein 4; SNRK3.22|SNF1-RELATED PROTEIN KINASE 3.22 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001044 | response to endoplasmic reticulum stress vacuolar membrane protein disulfide isomerase activity mitochondrion production of siRNA involved in chromatin silencing by small RNA response to pH long-distance posttranscriptional gene silencing cell redox homeostasis response to oxidative stress protein folding transferase activity, transferring glycosyl groups cell-cell signaling production of siRNA involved in RNA interference transcription, RNA-templated regulation of signal transduction endoplasmic reticulum sphingolipid biosynthesis (plants) xylogalacturonan biosynthesis RNA-directed RNA polymerase activity 5S rRNA binding Protein processing in endoplasmic reticulum fatty-acyl-CoA binding NLS-bearing protein import into nucleus Sphingolipid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) nuclear localization sequence binding translation defense response to fungus protein processing formation of translation preinitiation complex structural constituent of ribosome nuclear pore nucleoplasm protein transporter activity signal transduction translation initiation factor activity GTPase activity chloroplast RNA transport | details |
| CFinderADM001360 | fructose 2,6-bisphosphate biosynthesis double-stranded DNA 3'-5' exodeoxyribonuclease activity DNA-(apurinic or apyrimidinic site) lyase activity phosphatase activity base-excision repair dephosphorylation | details |
| CFinderADM002100 | single-organism process response to stimulus regulation of cellular process ubiquitin-protein transferase activity Transcription_related, Transcription factor: ERF Ubiquitin_Proteasome_system, E3: U-box cellular process protein ubiquitination | details |
Expression profiles
 Show details about module gene expression profiling |