CFinderADM001275's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein insertion into membrane | 2.02E-05 | GO:0051205 |
| response to endoplasmic reticulum stress | 0.000111192 | GO:0034976 |
| protein disulfide isomerase activity | 0.000229759 | GO:0003756 |
| Protein export | 0.001119193 | KEGG pathway |
| cell redox homeostasis | 0.003244524 | GO:0045454 |
| ligase activity | 0.003620772 | GO:0016874 |
| ubiquitin-protein transferase activity | 0.003620772 | GO:0004842 |
| protein folding | 0.003891443 | GO:0006457 |
| protein ubiquitination | 0.004600614 | GO:0016567 |
| Ubiquitin_Proteasome_system, E3: U-box | 0.005535855 | ubs family |
| Protein processing in endoplasmic reticulum | 0.010886735 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: RING | 0.023586607 | ubs family |
| endoplasmic reticulum | 0.038134979 | GO:0005783 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000518 | AT3G55510 (2.00E-123) | RBL|REBELOTE |
| CRO_T000714 | AT1G07960 (4.00E-45) | ATPDIL5-1|PDI-like 5-1 |
| CRO_T006792 | AT5G62050 (9.00E-43) | ATOXA1|HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 (OXA1); OXA1AT|HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 (OXA1) IN ARABIDOPSIS THALIANA |
| CRO_T007856 | AT1G29340 (4.00E-101) | ATPUB17|PLANT U-BOX 17 |
| CRO_T027805 | - | - |
| CRO_T033159 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000197 | anatomical structure morphogenesis meristem development response to endoplasmic reticulum stress protein disulfide isomerase activity single-organism developmental process protein serine/threonine phosphatase activity cell redox homeostasis protein dephosphorylation protein folding endoplasmic reticulum Protein processing in endoplasmic reticulum | details |
| CFinderADM001154 | phosphatidylethanolamine binding developmental process negative regulation of flower development response to UV-B vegetative to reproductive phase transition of meristem amino acid transmembrane transport amino acid transmembrane transporter activity ligase activity protein ubiquitination ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3: U-box cytoplasm | details |
| CFinderADM001272 | endodeoxyribonuclease activity, producing 5'-phosphomonoesters L-histidine transmembrane transporter activity Rab geranylgeranyltransferase activity arginine transmembrane transporter activity imidazoleglycerol-phosphate dehydratase activity Rab-protein geranylgeranyltransferase complex L-lysine transmembrane transporter activity DNA catabolic process protein geranylgeranylation arginine transmembrane transport L-lysine transmembrane transport L-histidine transmembrane transport GTP diphosphokinase activity guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity guanosine tetraphosphate metabolic process L-histidine biosynthesis histidine biosynthetic process response to starvation Biosynthesis of amino acids | details |
| CFinderADM001682 | ESCRT II complex protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway structural molecule activity amino acid transmembrane transport amino acid transmembrane transporter activity protein homodimerization activity Endocytosis integral component of membrane | details |
| CFinderADM001703 | regulation of transcription elongation from RNA polymerase II promoter hydroxymethylglutaryl-CoA reductase (NADPH) activity coenzyme A metabolic process mevalonate pathway I positive regulation of cell proliferation heterotrimeric G-protein complex Cul3-RING ubiquitin ligase complex G-protein coupled receptor signaling pathway isoprenoid biosynthetic process signal transducer activity Terpenoid backbone biosynthesis NADP binding ubiquitin-protein transferase activity endoplasmic reticulum membrane transmembrane transport integral component of membrane | details |
| CFinderADM001704 | positive regulation of G2/M transition of mitotic cell cycle protein insertion into membrane cullin deneddylation COP9 signalosome mitochondrial inner membrane presequence translocase complex Cul3-RING ubiquitin ligase complex protein import into mitochondrial matrix proteasome complex Protein export phosphoprotein phosphatase activity ubiquitin-protein transferase activity | details |
| CFinderADM001807 | endodeoxyribonuclease activity, producing 5'-phosphomonoesters L-glutamate transmembrane transporter activity L-glutamate import DNA catabolic process L-arginine import L-lysine transmembrane transport L-amino acid transport L-lysine transmembrane transporter activity antiporter activity phosphorylation protein kinase activity integral component of plasma membrane nucleotide binding | details |
| CFinderADM001945 | sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding protein disulfide isomerase activity response to endoplasmic reticulum stress regulation of transcription, DNA-templated Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: WRKY Transcription_related, Transcription regulator: mTERF cell redox homeostasis protein folding endoplasmic reticulum Protein processing in endoplasmic reticulum | details |
| CFinderADM002028 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K MAP kinase kinase activity receptor signaling protein serine/threonine kinase activity cell division MAPK cascade microtubule MAPK signaling pathway - plant embryo development ending in seed dormancy protein binding methyltransferase activity ubiquitin-protein transferase activity protein ubiquitination methylation | details |
Expression profiles
 Show details about module gene expression profiling |