CFinderADM001286's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glycolysis IV (plant cytosol) | 4.75E-08 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 4.88E-08 | plantCyc |
| Carbon metabolism | 4.20E-05 | KEGG pathway |
| Monoterpenoid biosynthesis | 4.20E-05 | KEGG pathway |
| extrinsic component of mitochondrial inner membrane | 7.25E-05 | GO:0031314 |
| glycolytic process through fructose-6-phosphate | 0.000102154 | GO:0061615 |
| fructose 6-phosphate metabolic process | 0.000102154 | GO:0006002 |
| cellular lipid metabolic process | 0.000102154 | GO:0044255 |
| Rubisco shunt | 0.000275818 | plantCyc |
| potassium ion binding | 0.000345855 | GO:0030955 |
| pyruvate kinase activity | 0.000345855 | GO:0004743 |
| 6-phosphofructokinase activity | 0.000345855 | GO:0003872 |
| Ubiquitin_Proteasome_system, E2: UBC | 0.000406597 | ubs family |
| carboxylic ester hydrolase activity | 0.000435707 | GO:0052689 |
| glycolytic process | 0.000811074 | GO:0006096 |
| Ubiquitin mediated proteolysis | 0.003330275 | KEGG pathway |
| plastid | 0.007704589 | GO:0009536 |
| magnesium ion binding | 0.011281481 | GO:0000287 |
| kinase activity | 0.017573867 | GO:0016301 |
| calcium ion binding | 0.017573867 | GO:0005509 |
| ATP binding | 0.017573867 | GO:0005524 |
| oxidoreductase activity | 0.048939826 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001789 | AT2G32970 (2.00E-150) | unknown protein |
| CRO_T003859 | AT4G27960 (2.00E-18) | UBC9|ubiquitin conjugating enzyme 9 |
| CRO_T011588 | AT1G12000 (1.00E-09) | Phosphofructokinase family protein |
| CRO_T013448 | - | - |
| CRO_T015636 | AT3G22960 (9.00E-168) | PKP1|PLASTIDIAL PYRUVATE KINASE 1 |
| CRO_T025741 | AT2G20800 (0) | NDB4|NAD(P)H dehydrogenase B4 |
| CRO_T030142 | AT1G10040 (8.00E-118) | alpha/beta-Hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001093 | regulation of RNA splicing uridylate kinase activity cytidylate kinase activity pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process nucleotide phosphorylation CMP phosphorylation UTP and CTP de novo biosynthesis nuclear membrane protein import into nucleus nuclear localization sequence binding Ran GTPase binding Ubiquitin_Proteasome_system, E2: UBC cytoplasm pyrimidine ribonucleotides interconversion Pyrimidine metabolism protein transporter activity Ubiquitin mediated proteolysis ATP binding | details |
| CFinderADM001606 | mitochondrion 4-aminobutanoate degradation I 4-aminobutanoate degradation IV glutamate decarboxylation to succinate gamma-aminobutyric acid catabolic process succinate-semialdehyde dehydrogenase (NAD+) activity ATP binding succinate-semialdehyde dehydrogenase [NAD(P)+] activity phosphomevalonate kinase activity proteasome storage granule mitochondrial alanyl-tRNA aminoacylation Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II alanine-tRNA ligase activity endopeptidase activity regulation of protein catabolic process reactive oxygen species metabolic process enzyme regulator activity L-glutamate degradation IV mevalonate pathway I 6-phosphofructokinase activity glycolytic process through fructose-6-phosphate fructose 6-phosphate metabolic process tRNA binding aldehyde dehydrogenase (NAD) activity Mitophagy - yeast Butanoate metabolism proteasome regulatory particle, base subcomplex ribosome binding response to light stimulus tRNA modification response to heat glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) regulation of catalytic activity amino acid binding Proteasome Terpenoid backbone biosynthesis mitochondrial matrix proteasome-mediated ubiquitin-dependent protein catabolic process Aminoacyl-tRNA biosynthesis zinc ion binding NAD binding copper ion binding plastid Plant hormone signal transduction calcium ion binding | details |
| CFinderADM002204 | pyruvate kinase activity potassium ion binding glycolytic process formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E2: UBC xylogalacturonan biosynthesis Rubisco shunt glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) Ubiquitin mediated proteolysis magnesium ion binding Carbon metabolism kinase activity hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |