CFinderADM001288's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 7.25E-06 | cazy family |
| xyloglucan 6-xylosyltransferase activity | 1.25E-05 | GO:0033843 |
| farnesyl-diphosphate farnesyltransferase activity | 1.25E-05 | GO:0004310 |
| squalene synthase activity | 1.25E-05 | GO:0051996 |
| Legionellosis | 2.02E-05 | KEGG pathway |
| epoxysqualene biosynthesis | 2.69E-05 | plantCyc |
| lipid biosynthetic process | 3.55E-05 | GO:0008610 |
| xyloglucan biosynthesis | 7.33E-05 | plantCyc |
| Steroid biosynthesis | 0.000317664 | KEGG pathway |
| integral component of membrane | 0.000501931 | GO:0016021 |
| structural constituent of ribosome | 0.019085236 | GO:0003735 |
| translation | 0.019214098 | GO:0006412 |
| transmembrane transport | 0.019214098 | GO:0055085 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001733 | AT3G62720 (0) | XT1|xylosyltransferase 1; XXT1|XYG XYLOSYLTRANSFERASE 1 |
| CRO_T001978 | AT1G02130 (2.00E-83) | ARA-5|RAS 5; ARA5|ARABIDOPSIS RAS 5; ATRAB1B|RESPONSIVE TO ABSCISIC ACID 1B; ATRABD2A|RAB D2A |
| CRO_T005120 | AT4G39840 (7.00E-99) | unknown protein |
| CRO_T019905 | AT4G26180 (7.00E-23) | CoAc2|CoA Carrier 2 |
| CRO_T028433 | AT2G22410 (5.00E-142) | SLO1|SLOW GROWTH 1 |
| CRO_T033615 | AT4G34640 (2.00E-18) | SQS1|squalene synthase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001067 | viral replication complex formation and maintenance formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan 6-xylosyltransferase activity Mismatch repair xyloglucan biosynthesis protein self-association plant-type vacuole membrane plasmodesma Golgi apparatus | details |
| CFinderADM001444 | formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan 6-xylosyltransferase activity N-acylphosphatidylethanolamine-specific phospholipase D activity phospholipase D activity phosphatidylcholine metabolic process choline biosynthesis III xyloglucan biosynthesis phosphatidate metabolism, as a signaling molecule phospholipases lipid catabolic process Glycerophospholipid metabolism hydrogen peroxide catabolic process cellular oxidant detoxification response to oxidative stress peroxidase activity Phenylpropanoid biosynthesis calcium ion binding vacuole plastid endoplasmic reticulum membrane extracellular region endoplasmic reticulum heme binding | details |
| CFinderADM001863 | formation of glycosidic bonds, GlycosylTransferases: GTnc phosphoribosylformylglycinamidine synthase activity xyloglucan 6-xylosyltransferase activity 5-aminoimidazole ribonucleotide biosynthesis I viral replication complex formation and maintenance protein self-association xyloglucan biosynthesis 'de novo' IMP biosynthetic process glutamine metabolic process cell division embryo development ending in seed dormancy Purine metabolism plant-type vacuole membrane Golgi apparatus plasmodesma | details |
| CFinderADM001968 | negative regulation of nitrogen compound metabolic process negative regulation of cellular macromolecule biosynthetic process production of small RNA involved in gene silencing by RNA regulation of primary metabolic process regulation of gene expression, epigenetic tRNA aminoacylation for protein translation aminoacyl-tRNA ligase activity N-acetyltransferase activity Transcription_related, Transcription regulator: GNAT iron-sulfur cluster binding Aminoacyl-tRNA biosynthesis nucleotide binding | details |
| CFinderADM002231 | Noc2p-Noc3p complex Noc1p-Noc2p complex viral replication complex formation and maintenance formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan 6-xylosyltransferase activity xyloglucan biosynthesis protein self-association ribosomal large subunit biogenesis nucleoplasm plant-type vacuole membrane response to oxidative stress cellular oxidant detoxification peroxidase activity nucleolus Golgi apparatus plasmodesma heme binding | details |
| CFinderADM002303 | Legionellosis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc regulation of salicylic acid metabolic process root epidermal cell differentiation cell wall macromolecule catabolic process response to nitrate chitinase activity cellulase activity cellulose catabolic process multidimensional cell growth chitin catabolic process response to heat response to cytokinin response to water deprivation cellulose biosynthetic process response to salt stress polysaccharide binding apoplast Golgi apparatus | details |
Expression profiles
 Show details about module gene expression profiling |