CFinderADM001311's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| tRNA 3'-trailer cleavage, endonucleolytic | 2.07E-05 | GO:0034414 |
| 3'-tRNA processing endoribonuclease activity | 2.07E-05 | GO:0042781 |
| Golgi organization | 0.000234116 | GO:0007030 |
| farnesylcysteine salvage pathway | 0.000542077 | plantCyc |
| geraniol and geranial biosynthesis | 0.000542077 | plantCyc |
| mannitol degradation II | 0.000542077 | plantCyc |
| acetaldehyde biosynthesis I | 0.000604756 | plantCyc |
| detoxification of reactive carbonyls in chloroplasts | 0.000604756 | plantCyc |
| pyruvate fermentation to ethanol II | 0.000604756 | plantCyc |
| traumatin and (Z)-3-hexen-1-yl acetate biosynthesis | 0.000604756 | plantCyc |
| Transcription_related, Transcription factor: bHLH | 0.001553548 | TF family |
| Phenylpropanoid biosynthesis | 0.002481059 | KEGG pathway |
| protein dimerization activity | 0.006975298 | GO:0046983 |
| RNA transport | 0.007525218 | KEGG pathway |
| transport | 0.014375006 | GO:0006810 |
| Golgi apparatus | 0.015692157 | GO:0005794 |
| intracellular | 0.015692157 | GO:0005622 |
| oxidoreductase activity | 0.048062092 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013544 | AT2G20180 (2.00E-23) | PIF1|PHY-INTERACTING FACTOR 1; PIL5|phytochrome interacting factor 3-like 5 |
| CRO_T015615 | AT1G72680 (7.00E-127) | ATCAD1|CINNAMYL ALCOHOL DEHYDROGENASE 1; CAD1|cinnamyl-alcohol dehydrogenase |
| CRO_T018813 | - | - |
| CRO_T021572 | AT1G04200 (4.00E-48) | unknown protein |
| CRO_T031713 | - | - |
| CRO_T032405 | AT1G74700 (6.00E-111) | TRZ1|tRNAse Z1 |
| CRO_T033340 | AT3G51610 (4.00E-42) | NPU|NO PRIMEXINE AND PLASMA MEMBRANE UNDULATION |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001407 | protein targeting to membrane plasmodesma protein N-glycosylation (eukaryotic, high mannose) SNARE interactions in vesicular transport cysteine-type endopeptidase activity SNAP receptor activity signal transducer activity SNARE binding vesicle docking integral component of membrane extracellular space Lysosome SNARE complex vesicle fusion hydrogen peroxide catabolic process peroxidase activity proteolysis involved in cellular protein catabolic process response to oxidative stress defense response signal transduction cellular oxidant detoxification Phenylpropanoid biosynthesis anchored component of plasma membrane transport extracellular region endoplasmic reticulum intracellular heme binding | details |
| CFinderADM001565 | borate uptake transmembrane transporter activity arsenite transmembrane transporter activity lateral plasma membrane response to boron-containing substance arsenite transport borate transmembrane transport response to arsenic-containing substance actin filament depolymerization xylan biosynthetic process actin cytoskeleton Regulation of actin cytoskeleton glycerol transport cellular water homeostasis water transport glycerol channel activity water channel activity actin binding integral component of plasma membrane | details |
| CFinderADM002058 | ethylene biosynthetic process fruit ripening 1-aminocyclopropane-1-carboxylate oxidase activity peptidyl-lysine monomethylation ethylene biosynthesis I (plants) protein-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET L-ascorbic acid binding Cysteine and methionine metabolism dioxygenase activity | details |
| CFinderADM002064 | Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II Cell cycle - Caulobacter acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis phospholipases Inositol phosphate metabolism ATP-dependent peptidase activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity signal transducer activity plastoglobule Phenylpropanoid biosynthesis mitochondrial matrix unfolded protein binding hydrolase activity, acting on ester bonds calmodulin binding peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation protein catabolic process signal transduction defense response intracellular signal transduction anchored component of plasma membrane protein folding ATP binding calcium ion binding plasmodesma proteolysis metabolic process oxidoreductase activity | details |
| CFinderADM002259 | Transcription_related, Transcription regulator: TRAF Golgi organization Ubiquitin_Proteasome_system, E3 adaptor: BTB cytosolic large ribosomal subunit Golgi apparatus Plant hormone signal transduction translation Ribosome nucleic acid binding structural constituent of ribosome | details |
| CFinderADM002282 | Spliceosome Transcription_related, Transcription factor: MYB helicase activity unfolded protein binding 2-alkenal reductase [NAD(P)] activity protein folding ATP binding nucleic acid binding DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |