CFinderADM001398's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of lateral root development | 3.43E-05 | GO:2000023 |
| oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor | 5.15E-05 | GO:0016668 |
| actin cytoskeleton | 7.27E-05 | GO:0015629 |
| response to gibberellin | 0.000119917 | GO:0009739 |
| Transcription_related, Transcription regulator: LIM | 0.000127723 | TF family |
| Ubiquitin_Proteasome_system, E3: RING | 0.000127723 | ubs family |
| cytokinin-activated signaling pathway | 0.000128392 | GO:0009736 |
| actin filament depolymerization | 0.000128392 | GO:0030042 |
| cell proliferation | 0.000150575 | GO:0008283 |
| negative regulation of abscisic acid-activated signaling pathway | 0.000199485 | GO:0009788 |
| negative regulation of transcription, DNA-templated | 0.000341489 | GO:0045892 |
| Regulation of actin cytoskeleton | 0.000348493 | KEGG pathway |
| Viral carcinogenesis | 0.000348493 | KEGG pathway |
| glycolysis I (from glucose 6-phosphate) | 0.000673859 | plantCyc |
| Transcription_related, Transcription regulator: PHD | 0.000813188 | TF family |
| root development | 0.000996267 | GO:0048364 |
| response to auxin | 0.001601192 | GO:0009733 |
| RNA degradation | 0.002123792 | KEGG pathway |
| zinc ion binding | 0.002188283 | GO:0008270 |
| actin binding | 0.002188283 | GO:0003779 |
| Transcription_related, Transcription factor: HB | 0.003258741 | TF family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.018914897 | cazy family |
| catalytic activity | 0.036927031 | GO:0003824 |
| iron ion binding | 0.049891903 | GO:0005506 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001705 | AT3G19510 (1.00E-51) | HAT3.1|Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain |
| CRO_T005133 | AT1G12850 (7.00E-110) | Phosphoglycerate mutase family protein |
| CRO_T006269 | AT3G49730 (1.00E-30) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T007902 | AT2G25170 (0) | CKH2|CYTOKININ-HYPERSENSITIVE 2; EPP1|ENHANCED PHOTOMORPHOGENIC 1; GYM|GYMNOS; PKL|PICKLE; SSL2|SUPPRESSOR OF SLR 2 |
| CRO_T011991 | AT1G10200 (2.00E-54) | WLIM1|WLIM1 |
| CRO_T027908 | AT2G31200 (5.00E-55) | ADF6|actin depolymerizing factor 6 |
| CRO_T030661 | AT1G02080 (0) | transcription regulators |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000094 | Transcription_related, Transcription regulator: LIM magnesium ion transport magnesium ion transmembrane transport magnesium ion transmembrane transporter activity glycolysis I (from glucose 6-phosphate) | details |
| CFinderADM000296 | post-embryonic root development Transcription_related, Transcription regulator: LIM Mitophagy - animal PPAR signaling pathway MAPK signaling pathway - yeast anaphase-promoting complex binding ubiquitin-protein transferase activator activity protein domain specific binding 3'-5' exonuclease activity ATP-dependent peptidase activity regulation of catalytic activity nucleic acid phosphodiester bond hydrolysis Ubiquitin mediated proteolysis Ubiquitin_Proteasome_system, E3 adaptor: DWD calcium ion binding proteolysis binding RNA binding | details |
| CFinderADM000310 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc post-embryonic root development trehalose metabolic process alpha,alpha-trehalase activity Transcription_related, Transcription regulator: LIM pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process cytidylate kinase activity uridylate kinase activity nucleotide phosphorylation CMP phosphorylation pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis protein domain specific binding MAPK signaling pathway - yeast Pyrimidine metabolism pyrimidine ribonucleotides interconversion cytosol nucleus Starch and sucrose metabolism apoplast calcium ion binding hydrolase activity | details |
| CFinderADM000623 | borate uptake transmembrane transporter activity arsenite transmembrane transporter activity DNA ligase activity Transcription_related, Transcription regulator: LIM lateral plasma membrane borate transmembrane transport post-embryonic root development arsenite transport response to boron-containing substance hydroxymethylglutaryl-CoA reductase (NADPH) activity coenzyme A metabolic process response to arsenic-containing substance Non-homologous end-joining cytidylate kinase activity uridylate kinase activity peroxisomal membrane pyrimidine nucleotide biosynthetic process sterol biosynthetic process xylan biosynthetic process CMP phosphorylation mevalonate pathway I pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis 'de novo' pyrimidine nucleobase biosynthetic process MAPK signaling pathway - yeast cellular macromolecule biosynthetic process protein domain specific binding nucleotide phosphorylation glycerol transport isoprenoid biosynthetic process water transport cellular water homeostasis glycerol channel activity water channel activity Pyrimidine metabolism pyrimidine ribonucleotides interconversion single-organism process Terpenoid backbone biosynthesis NADP binding DNA repair cytosol apoplast endoplasmic reticulum membrane nucleus integral component of plasma membrane calcium ion binding | details |
| CFinderADM000968 | cellular response to gravity tubulin complex Phagosome response to cadmium ion cell surface receptor signaling pathway microtubule-based process structural constituent of cytoskeleton plasma membrane microtubule apoplast GTPase activity cAMP-dependent protein kinase activity cell wall GTP binding plasmodesma Insulin signaling pathway Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase exocyst cell wall organization or biogenesis exocytosis protein phosphorylation glycolysis I (from glucose 6-phosphate) O-acetyltransferase activity cytosol polysaccharide binding protein dimerization activity Golgi apparatus adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001019 | protein catabolic process aspartic-type endopeptidase activity proteolysis cellulose synthase (UDP-forming) activity cellulose biosynthetic process RNA degradation cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001515 | anchored component of plasma membrane salicylate glucosides biosynthesis II quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis RNA degradation signal transducer activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity polysaccharide binding signal transduction defense response flavonoid glucuronidation flavonoid biosynthetic process hydrolase activity, hydrolyzing O-glycosyl compounds plasmodesma intracellular membrane-bounded organelle formation of glycosidic bonds, GlycosylTransferases: GTnc carbohydrate metabolic process integral component of membrane | details |
| CFinderADM001565 | borate uptake transmembrane transporter activity arsenite transmembrane transporter activity lateral plasma membrane response to boron-containing substance arsenite transport borate transmembrane transport response to arsenic-containing substance actin filament depolymerization xylan biosynthetic process actin cytoskeleton Regulation of actin cytoskeleton glycerol transport cellular water homeostasis water transport glycerol channel activity water channel activity actin binding integral component of plasma membrane | details |
| CFinderADM001881 | mitotic spindle assembly checkpoint Transcription_related, Transcription regulator: LIM Cell cycle Transcription_related, Transcription factor: bZIP sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated | details |
| CFinderADM002173 | transcription export complex 2 DUBm complex histone deubiquitination SAGA complex mRNA export from nucleus transcription elongation from RNA polymerase II promoter cytoplasmic, membrane-bounded vesicle beta-galactosidase activity transcription coactivator activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc nuclear pore glycolysis I (from glucose 6-phosphate) positive regulation of transcription, DNA-templated protein transport Transcription_related, Transcription factor: HB vacuole apoplast carbohydrate binding cell wall carbohydrate metabolic process Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM002235 | regulation of cell cycle Transcription_related, Transcription regulator: LIM Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase cyclin-dependent protein serine/threonine kinase activity plasma membrane calcium-dependent phospholipid binding RNA degradation carbohydrate binding transferase activity, transferring glycosyl groups adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 calcium ion binding integral component of membrane protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |