CFinderADM001405's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Rho guanyl-nucleotide exchange factor activity | 6.60E-09 | GO:0005089 |
| glucan endo-1,3-beta-D-glucosidase activity | 6.60E-09 | GO:0042973 |
| carbohydrate metabolic process | 2.07E-07 | GO:0005975 |
| positive regulation of GTPase activity | 2.65E-07 | GO:0043547 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 3.09E-07 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 3.73E-07 | cazy family |
| sphingomyelin phosphodiesterase activity | 6.95E-05 | GO:0004767 |
| DNA-3-methyladenine glycosylase activity | 9.72E-05 | GO:0008725 |
| base-excision repair | 0.000458435 | GO:0006284 |
| glutamine metabolic process | 0.000458435 | GO:0006541 |
| beta-galactosidase activity | 0.000621776 | GO:0004565 |
| Base excision repair | 0.000725391 | KEGG pathway |
| Ras signaling pathway | 0.000725391 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.002015336 | ubs family |
| cytoplasmic, membrane-bounded vesicle | 0.003049395 | GO:0016023 |
| small GTPase mediated signal transduction | 0.003926416 | GO:0007264 |
| polysaccharide binding | 0.004828425 | GO:0030247 |
| carbohydrate binding | 0.007747799 | GO:0030246 |
| Starch and sucrose metabolism | 0.013619206 | KEGG pathway |
| plasma membrane | 0.015837214 | GO:0005886 |
| vacuole | 0.016818 | GO:0005773 |
| apoplast | 0.016818 | GO:0048046 |
| anchored component of plasma membrane | 0.016818 | GO:0046658 |
| transport | 0.021953704 | GO:0006810 |
| GTP binding | 0.024625495 | GO:0005525 |
| cell wall | 0.035489626 | GO:0005618 |
| integral component of membrane | 0.035489626 | GO:0016021 |
| intracellular | 0.046027037 | GO:0005622 |
| transferase activity | 0.047505984 | GO:0016740 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002079 | AT2G05790 (0) | O-Glycosyl hydrolases family 17 protein |
| CRO_T002181 | AT1G75090 (4.00E-90) | DNA glycosylase superfamily protein |
| CRO_T006610 | AT3G08570 (0) | Phototropic-responsive NPH3 family protein |
| CRO_T007195 | - | - |
| CRO_T015396 | AT1G66250 (0) | O-Glycosyl hydrolases family 17 protein |
| CRO_T019606 | AT4G38430 (2.00E-51) | ROPGEF1|ROP (rho of plants) guanine nucleotide exchange factor 1 |
| CRO_T019953 | AT3G46060 (3.00E-20) | ATRAB8A|RAB GTPase homolog 8A |
| CRO_T020260 | AT3G51670 (3.00E-171) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
| CRO_T026377 | AT1G31740 (0) | BGAL15|beta-galactosidase 15 |
| CRO_T033532 | AT4G38430 (3.00E-76) | ROPGEF1|ROP (rho of plants) guanine nucleotide exchange factor 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000686 | glycerol-3-phosphate shuttle Protein_kinases_phosphatases, PPC:1.13.5: Leucine Rich Repeat Kinase III 8-amino-7-oxononanoate synthase activity Biotin metabolism sphingomyelin phosphodiesterase activity glycerol-3-phosphate catabolic process biotin biosynthetic process integral component of membrane glycerol-3-phosphate dehydrogenase [NAD+] activity glycerol-3-phosphate dehydrogenase complex Ras signaling pathway carbohydrate metabolic process cellular macromolecule biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: bZIP cytoplasmic, membrane-bounded vesicle beta-galactosidase activity DNA metabolic process carbohydrate transport Glycerophospholipid metabolism proton transport nucleotidyltransferase activity sugar:proton symporter activity small GTPase mediated signal transduction protein homodimerization activity NAD binding organic cyclic compound binding heterocyclic compound binding carbohydrate binding Golgi membrane pyridoxal phosphate binding | details |
| CFinderADM001033 | methylammonium transmembrane transport RNA surveillance nuclear-transcribed mRNA catabolic process, no-go decay nuclear-transcribed mRNA catabolic process, non-stop decay methylammonium transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III protein storage vacuole water transport central vacuole water channel activity beta-galactosidase activity endonuclease activity cytoplasmic, membrane-bounded vesicle mRNA surveillance pathway nucleic acid phosphodiester bond hydrolysis peptidase activity plant-type vacuole membrane plasma membrane carbohydrate binding integral component of membrane vacuole plant-type cell wall apoplast cell wall Golgi apparatus chloroplast envelope carbohydrate metabolic process plasmodesma proteolysis protein kinase activity | details |
| CFinderADM001406 | Rho guanyl-nucleotide exchange factor activity positive regulation of GTPase activity Transcription_related, Transcription factor: BBR-BPC DNA-3-methyladenine glycosylase activity base-excision repair glutamine metabolic process non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 pectate lyase activity Base excision repair peptidyl-tyrosine phosphorylation non-membrane spanning protein tyrosine kinase activity Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII pectin catabolic process Pentose and glucuronate interconversions dioxygenase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 transferase activity | details |
| CFinderADM001555 | sphingomyelin phosphodiesterase activity voltage-gated chloride channel activity Ras signaling pathway chloride transport cellulase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 regulation of anion transmembrane transport cellulose catabolic process unidimensional cell growth ion transmembrane transport hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3 adaptor: BTB small GTPase mediated signal transduction transporter activity GTP binding transmembrane transport | details |
| CFinderADM001641 | cellular oxidant detoxification response to oxidative stress L-ascorbate peroxidase activity heme binding L-ascorbate degradation V ascorbate glutathione cycle Ascorbate and aldarate metabolism Ubiquitin_Proteasome_system, E3 adaptor: BTB carbohydrate transport proton transport hydrogen peroxide catabolic process sugar:proton symporter activity oxidation-reduction process peroxidase activity Phenylpropanoid biosynthesis anchored component of plasma membrane endosome trans-Golgi network Golgi membrane extracellular region integral component of membrane | details |
| CFinderADM001673 | Cell cycle hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cytoplasmic, membrane-bounded vesicle formation of glycosidic bonds, GlycosylTransferases: GTnc beta-galactosidase activity Transcription_related, Transcription factor: MYB apoplast vacuole carbohydrate binding cell wall carbohydrate metabolic process transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated | details |
| CFinderADM002084 | sphingomyelin phosphodiesterase activity Ras signaling pathway cellular macromolecule biosynthetic process Transcription_related, Transcription factor: bZIP DNA metabolic process plasma membrane nucleotidyltransferase activity small GTPase mediated signal transduction heterocyclic compound binding organic cyclic compound binding GTP binding intracellular | details |
| CFinderADM002105 | mitochondria-associated ubiquitin-dependent protein catabolic process nucleus-associated proteasomal ubiquitin-dependent protein catabolic process carbohydrate metabolic process Cdc48p-Npl4p-Vms1p AAA ATPase complex ER-associated ubiquitin-dependent protein catabolic process glucan endo-1,3-beta-D-glucosidase activity thiol-dependent ubiquitin-specific protease activity beta-galactosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cytoplasmic, membrane-bounded vesicle Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 polysaccharide binding Starch and sucrose metabolism intracellular part anchored component of plasma membrane apoplast vacuole carbohydrate binding cell wall protein kinase activity protein phosphorylation | details |
| CFinderADM002118 | sphingomyelin phosphodiesterase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Fanconi anemia pathway Ras signaling pathway Rho guanyl-nucleotide exchange factor activity DNA-directed DNA polymerase activity beta-galactosidase activity damaged DNA binding cytoplasmic, membrane-bounded vesicle DNA biosynthetic process positive regulation of GTPase activity small GTPase mediated signal transduction DNA repair carbohydrate binding transporter activity apoplast vacuole GTP binding cell wall intracellular plasmodesma carbohydrate metabolic process transmembrane transport | details |
| CFinderADM002173 | transcription export complex 2 DUBm complex histone deubiquitination SAGA complex mRNA export from nucleus transcription elongation from RNA polymerase II promoter cytoplasmic, membrane-bounded vesicle beta-galactosidase activity transcription coactivator activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc nuclear pore glycolysis I (from glucose 6-phosphate) positive regulation of transcription, DNA-templated protein transport Transcription_related, Transcription factor: HB vacuole apoplast carbohydrate binding cell wall carbohydrate metabolic process Ubiquitin_Proteasome_system, E3: RING | details |
Expression profiles
 Show details about module gene expression profiling |