CFinderADM001466's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| condensed chromosome kinetochore | 1.38E-05 | GO:0000777 |
| nuclear pore outer ring | 1.73E-05 | GO:0031080 |
| transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery | 1.79E-05 | GO:0000972 |
| chromatin organization | 1.79E-05 | GO:0006325 |
| nuclear pore distribution | 1.79E-05 | GO:0031081 |
| RNA export from nucleus | 3.22E-05 | GO:0006405 |
| nucleocytoplasmic transporter activity | 8.96E-05 | GO:0005487 |
| structural constituent of nuclear pore | 8.96E-05 | GO:0017056 |
| regulation of transcription, DNA-templated | 9.14E-05 | GO:0006355 |
| histone acetylation | 0.000112982 | GO:0016573 |
| histone acetyltransferase activity | 0.000117114 | GO:0004402 |
| protein import into nucleus | 0.000128892 | GO:0006606 |
| Transcription_related, Transcription factor: HB | 0.000664232 | TF family |
| membrane | 0.001706074 | GO:0016020 |
| RNA transport | 0.002712166 | KEGG pathway |
| DNA binding | 0.048926206 | GO:0003677 |
| chloroplast | 0.049254301 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002476 | AT5G64610 (8.00E-43) | HAM1|histone acetyltransferase of the MYST family 1 |
| CRO_T010196 | - | - |
| CRO_T012795 | AT2G26920 (2.00E-120) | Ubiquitin-associated/translation elongation factor EF1B protein |
| CRO_T023904 | AT2G05120 (8.00E-82) | Nucleoporin, Nup133/Nup155-like |
| CRO_T028451 | AT2G22430 (2.00E-23) | ATHB6|homeobox protein 6 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001338 | L-glutamate degradation I L-alanine degradation II (to D-lactate) glutamate dehydrogenase [NAD(P)+] activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc mannan catabolic process histone acetylation cellular amino acid metabolic process histone acetyltransferase activity mannan endo-1,4-beta-mannosidase activity Fructose and mannose metabolism transferase activity, transferring glycosyl groups Carbon metabolism | details |
| CFinderADM001360 | fructose 2,6-bisphosphate biosynthesis double-stranded DNA 3'-5' exodeoxyribonuclease activity DNA-(apurinic or apyrimidinic site) lyase activity phosphatase activity base-excision repair dephosphorylation | details |
| CFinderADM002195 | nuclear-transcribed mRNA catabolic process proteasome regulatory particle, lid subcomplex deoxyribonucleoside diphosphate metabolic process proteasome assembly Transcription_related, Transcription factor: G2-like deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase complex regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor large ribosomal subunit rRNA binding histone acetyltransferase activity structural molecule activity histone acetylation cytoplasmic translation ribosomal large subunit assembly preribosome, large subunit precursor Proteasome rRNA processing multicellular organism development ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction nucleus cytosolic large ribosomal subunit Purine metabolism nucleolus GTP binding intracellular structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |