CFinderADM001473's detailed annotation
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
Function Annotation | FDR | Gene Ontolog |
---|---|---|
cytoplasmic mRNA processing body assembly | 1.38E-05 | GO:0033962 |
deadenylation-dependent decapping of nuclear-transcribed mRNA | 2.42E-05 | GO:0000290 |
mannose metabolic process | 2.76E-05 | GO:0006013 |
Other glycan degradation | 5.10E-05 | KEGG pathway |
alpha-mannosidase activity | 6.15E-05 | GO:0004559 |
COPII vesicle coat | 0.000179257 | GO:0030127 |
cytoplasmic mRNA processing body | 0.000265062 | GO:0000932 |
zinc ion binding | 0.000294649 | GO:0008270 |
ER to Golgi vesicle-mediated transport | 0.00044624 | GO:0006888 |
RNA degradation | 0.000898409 | KEGG pathway |
carbohydrate binding | 0.002151293 | GO:0030246 |
intracellular protein transport | 0.002556959 | GO:0006886 |
vacuole | 0.003236116 | GO:0005773 |
RNA binding | 0.012599724 | GO:0003723 |
Module member annotation
Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
---|---|---|
CRO_T002553 | AT1G79090 (0) | unknown protein |
CRO_T006036 | AT4G01810 (0) | Sec23/Sec24 protein transport family protein |
CRO_T014643 | AT3G26720 (0) | Glycosyl hydrolase family 38 protein |
CRO_T015424 | AT5G61960 (6.00E-163) | AML1|MEI2-like protein 1 |
CRO_T024653 | AT4G39420 (9.00E-176) | unknown protein |
Direct connection functional modules
Module ID | Function Annotation | Overlap condition |
---|---|---|
CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
CFinderADM001472 | argininosuccinate metabolic process cytoplasmic mRNA processing body assembly argininosuccinate synthase activity deadenylation-dependent decapping of nuclear-transcribed mRNA urea cycle Transcription_related, Transcription factor: EIL Protein_kinases_phosphatases, PPC:4.1.5.1: WNK like kinase - with no lysine kinase arginine biosynthetic process cytoplasmic mRNA processing body Biosynthesis of amino acids MAPK signaling pathway - plant RNA degradation Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated | details |
CFinderADM001655 | cytoplasmic mRNA processing body assembly pyrimidine ribonucleosides salvage I deadenylation-dependent decapping of nuclear-transcribed mRNA vacuolar transport cytoplasmic mRNA processing body response to abscisic acid Endocytosis RNA degradation phosphorylation kinase activity intracellular RNA binding | details |
CFinderADM001720 | MicroRNAs in cancer Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase L-amino acid transmembrane transporter activity amino acid transmembrane transport Transcription_related, Transcription factor: C2H2 antiporter activity integral component of plasma membrane calcium ion binding kinase activity phosphorylation nucleotide binding | details |
CFinderADM001836 | MicroRNAs in cancer L-amino acid transmembrane transporter activity antiporter activity Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase integral component of plasma membrane L-amino acid transport long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay L-alpha-amino acid transmembrane transport sugar mediated signaling pathway COPII vesicle coat response to wounding cytoplasmic mRNA processing body salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cytosol zinc ion binding ER to Golgi vesicle-mediated transport amino acid transmembrane transport defense response to bacterium helicase activity RNA transport intracellular protein transport kinase activity plasmodesma phosphorylation | details |
Expression profiles
Show details about module gene expression profiling |