CFinderADM001474's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA polymerase II carboxy-terminal domain kinase activity | 2.42E-05 | GO:0008353 |
| Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family | 7.63E-05 | kinase family |
| ribosomal small subunit biogenesis | 7.68E-05 | GO:0042274 |
| 90S preribosome | 9.00E-05 | GO:0030686 |
| cytosolic small ribosomal subunit | 0.000653076 | GO:0022627 |
| small-subunit processome | 0.000653076 | GO:0032040 |
| rRNA processing | 0.000731091 | GO:0006364 |
| Ribosome | 0.009378814 | KEGG pathway |
| translation | 0.019615888 | GO:0006412 |
| structural constituent of ribosome | 0.020802824 | GO:0003735 |
| protein phosphorylation | 0.033482996 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004077 | - | - |
| CRO_T004348 | AT1G48830 (3.00E-44) | Ribosomal protein S7e family protein |
| CRO_T010022 | AT1G20930 (3.00E-137) | CDKB2; 2|cyclin-dependent kinase B2; 2 |
| CRO_T011511 | AT3G26850 (8.00E-34) | histone-lysine N-methyltransferases |
| CRO_T023129 | AT2G35940 (3.00E-15) | BLH1|BEL1-like homeodomain 1; EDA29|embryo sac development arrest 29 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001165 | cytoplasmic mRNA processing body assembly positive regulation of cytoplasmic mRNA processing body assembly deadenylation-independent decapping of nuclear-transcribed mRNA negative regulation of translation cytoplasmic mRNA processing body protein homodimerization activity Ubiquitin mediated proteolysis Ribosome translation structural constituent of ribosome | details |
| CFinderADM001387 | post-mRNA release spliceosomal complex catalytic step 1 spliceosome Prp19 complex prespliceosome spliceosomal complex assembly precatalytic spliceosome catalytic step 2 spliceosome small GTPase mediated signal transduction Protein export GTP binding Spliceosome intracellular | details |
| CFinderADM001655 | cytoplasmic mRNA processing body assembly pyrimidine ribonucleosides salvage I deadenylation-dependent decapping of nuclear-transcribed mRNA vacuolar transport cytoplasmic mRNA processing body response to abscisic acid Endocytosis RNA degradation phosphorylation kinase activity intracellular RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |