CFinderADM001502's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitochondrial inner membrane peptidase complex | 1.73E-05 | GO:0042720 |
| Transcription_related, Transcription factor: TUB | 2.36E-05 | TF family |
| cilium | 2.60E-05 | GO:0005929 |
| response to fungus | 3.82E-05 | GO:0009620 |
| response to bacterium | 3.82E-05 | GO:0009617 |
| mitochondrial respiratory chain complex assembly | 3.82E-05 | GO:0033108 |
| protein processing involved in protein targeting to mitochondrion | 3.82E-05 | GO:0006627 |
| protein localization to cilium | 3.82E-05 | GO:0061512 |
| thylakoid membrane organization | 4.67E-05 | GO:0010027 |
| signal peptide processing | 5.52E-05 | GO:0006465 |
| Protein export | 0.000275252 | KEGG pathway |
| isoflavonoid biosynthesis II | 0.000394429 | plantCyc |
| leucodelphinidin biosynthesis | 0.000394429 | plantCyc |
| pinobanksin biosynthesis | 0.000394429 | plantCyc |
| Flavonoid biosynthesis | 0.000477075 | KEGG pathway |
| flavonoid biosynthesis (in equisetum) | 0.000477075 | plantCyc |
| phosphatidylinositol binding | 0.000580521 | GO:0035091 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.000973884 | plantCyc |
| dioxygenase activity | 0.003519836 | GO:0051213 |
| serine-type endopeptidase activity | 0.003519836 | GO:0004252 |
| chloroplast thylakoid membrane | 0.003900986 | GO:0009535 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.004724179 | ubs family |
| hydrolase activity | 0.024299033 | GO:0016787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002311 | AT1G18480 (5.00E-132) | SLP2|Shewenella-like protein phosphatase 2 |
| CRO_T011212 | AT5G16080 (3.00E-27) | AtCXE17|carboxyesterase 17 |
| CRO_T014086 | AT1G53320 (7.00E-145) | AtTLP7|tubby like protein 7 |
| CRO_T017239 | AT4G10490 (5.00E-104) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T019476 | AT1G47310 (1.00E-65) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001085 | formation of glycosidic bonds, GlycosylTransferases: GTnc oligosaccharide biosynthetic process alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity Golgi stack pentose phosphate pathway (oxidative branch) I phosphogluconate dehydrogenase (decarboxylating) activity pentose-phosphate shunt N-Glycan biosynthesis Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII methyltransferase activity methylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Carbon metabolism hydrolase activity integral component of membrane protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001295 | 3-dehydroquinate biosynthesis I protein localization to cilium Transcription_related, Transcription factor: TUB cilium phosphatidylinositol binding cell part Biosynthesis of amino acids Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
Expression profiles
 Show details about module gene expression profiling |