CFinderADM001538's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| clathrin-mediated endocytosis | 1.15E-05 | GO:0072583 |
| clathrin vesicle coat | 1.71E-05 | GO:0030125 |
| clathrin heavy chain binding | 1.76E-05 | GO:0032050 |
| regulation of signal transduction | 3.81E-05 | GO:0009966 |
| structural molecule activity | 0.000249583 | GO:0005198 |
| Ubiquitin_Proteasome_system, E2: UBC | 0.000560407 | ubs family |
| endomembrane system | 0.001759775 | GO:0012505 |
| ubiquitin-protein transferase activity | 0.003769456 | GO:0004842 |
| serine-type endopeptidase activity | 0.003769456 | GO:0004252 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.007086269 | ubs family |
| proteolysis | 0.007526889 | GO:0006508 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007196 | AT1G23780 (1.00E-51) | F-box family protein |
| CRO_T009453 | AT3G03380 (2.00E-105) | DEG7|degradation of periplasmic proteins 7; DegP7|DegP protease 7 |
| CRO_T012421 | AT2G40060 (9.00E-39) | CLC2|clathrin light chain 2 |
| CRO_T017205 | AT3G15352 (6.00E-21) | ATCOX17|CYTOCHROME C OXIDASE 17 |
| CRO_T020704 | AT5G05080 (3.00E-21) | UBC22|ubiquitin-conjugating enzyme 22 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000434 | Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I NF-kappa B signaling pathway Ubiquitin_Proteasome_system, E2: UBC Ubiquitin mediated proteolysis transferase activity, transferring hexosyl groups peptidyl-prolyl cis-trans isomerase activity protein peptidyl-prolyl isomerization Ubiquitin_Proteasome_system, E3: U-box serine-type endopeptidase activity ubiquitin-protein transferase activity lipid metabolic process protein folding protein ubiquitination formation of glycosidic bonds, GlycosylTransferases: GTnc extracellular region cell wall ATP binding transport protein kinase activity | details |
| CFinderADM000893 | regulation of transcription, DNA-templated circadian regulation of gene expression positive regulation of systemic acquired resistance regulation of long-day photoperiodism, flowering regulation of jasmonic acid mediated signaling pathway regulation of ethylene-activated signaling pathway nuclear euchromatin FACT complex CCR4-NOT core complex Transcription_related, Transcription regulator: HMG negative regulation of translation polar nucleus fusion nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay response to osmotic stress cytoplasmic mRNA processing body mediator complex vegetative to reproductive phase transition of meristem RNA degradation DNA replication DNA repair serine-type endopeptidase activity 2-alkenal reductase [NAD(P)] activity proteolysis transcription, DNA-templated DNA binding | details |
| CFinderADM001301 | plant-type cell wall modification Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Arginine and proline metabolism pollen tube growth peptidyl-serine phosphorylation hydrogen peroxide catabolic process intracellular signal transduction cellular oxidant detoxification response to oxidative stress Phenylpropanoid biosynthesis peroxidase activity serine-type endopeptidase activity extracellular region intracellular proteolysis heme binding | details |
| CFinderADM001799 | clathrin vesicle coat clathrin-mediated endocytosis clathrin heavy chain binding structural molecule activity peptidyl-tyrosine phosphorylation non-membrane spanning protein tyrosine kinase activity Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII endomembrane system dioxygenase activity serine-type endopeptidase activity proteolysis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Ubiquitin_Proteasome_system, E3 adaptor: F-box protein serine/threonine kinase activity | details |
| CFinderADM002021 | Protein_kinases_phosphatases, PPC:2.2.2: C-terminal Ankyrin Repeat Domain Kinase phospholipase A2 activity Thyroid hormone signaling pathway developmental growth late endosome to vacuole transport positive regulation of cell proliferation secretion by cell early endosome core mediator complex protein secretion cold acclimation vesicle docking involved in exocytosis negative regulation of abscisic acid-activated signaling pathway AMPK signaling pathway protein self-association RNA polymerase II transcription cofactor activity Basal transcription factors mediator complex Ubiquitin_Proteasome_system, E2: UBC regulation of transcription from RNA polymerase II promoter abscisic acid-activated signaling pathway coenzyme binding small GTPase mediated signal transduction lipid metabolic process defense response trans-Golgi network protein ubiquitination ubiquitin-protein transferase activity plasmodesma intracellular ATP binding GTP binding catalytic activity Ubiquitin_Proteasome_system, E3: RING hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |