CFinderADM001623's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RIG-I-like receptor signaling pathway | 6.60E-06 | KEGG pathway |
| phytol metabolic process | 1.76E-05 | GO:0033306 |
| protein repair | 3.07E-05 | GO:0030091 |
| peptide-methionine (R)-S-oxide reductase activity | 3.39E-05 | GO:0033743 |
| strictosidine synthase activity | 7.91E-05 | GO:0016844 |
| diacylglycerol O-acyltransferase activity | 0.000103539 | GO:0004144 |
| diacylglycerol and triacylglycerol biosynthesis | 0.00081995 | plantCyc |
| secologanin and strictosidine biosynthesis | 0.00081995 | plantCyc |
| RNA secondary structure unwinding | 0.00083475 | GO:0010501 |
| plastoglobule | 0.000984109 | GO:0010287 |
| triacylglycerol degradation | 0.001028517 | plantCyc |
| lyase activity | 0.001517627 | GO:0016829 |
| ATP-dependent RNA helicase activity | 0.001881805 | GO:0004004 |
| hydrolase activity, acting on ester bonds | 0.001881805 | GO:0016788 |
| response to oxidative stress | 0.003219637 | GO:0006979 |
| plant-type cell wall | 0.006603567 | GO:0009505 |
| Ribosome | 0.009065657 | KEGG pathway |
| endoplasmic reticulum | 0.013705427 | GO:0005783 |
| plasmodesma | 0.014913114 | GO:0009506 |
| translation | 0.019197551 | GO:0006412 |
| RNA binding | 0.020848468 | GO:0003723 |
| structural constituent of ribosome | 0.025751331 | GO:0003735 |
| nucleic acid binding | 0.025751331 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000727 | AT5G24850 (0) | CRY3|cryptochrome 3 |
| CRO_T021502 | AT3G57030 (3.00E-145) | Calcium-dependent phosphotriesterase superfamily protein |
| CRO_T023587 | AT1G53670 (7.00E-56) | MSRB1|methionine sulfoxide reductase B 1 |
| CRO_T027349 | AT1G54570 (0) | PES1|phytyl ester synthase 1 |
| CRO_T032746 | AT3G58570 (2.00E-121) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000713 | nucleotidase activity RIG-I-like receptor signaling pathway guanosine nucleotides degradation I guanosine nucleotides degradation II pyrimidine salvage pathway adenosine nucleotides degradation I RNA secondary structure unwinding dephosphorylation heterocyclic compound binding organic cyclic compound binding ATP-dependent RNA helicase activity Purine metabolism nucleic acid binding | details |
| CFinderADM001520 | potassium:chloride symporter activity sodium:potassium:chloride symporter activity potassium ion symporter activity Hippo signaling pathway -fly peptide-methionine (R)-S-oxide reductase activity chloride transmembrane transport protein repair potassium ion transmembrane transport transferase activity, transferring acyl groups response to oxidative stress trans-Golgi network endosome Ubiquitin_Proteasome_system, E3: RING protein kinase activity protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |