CFinderADM001791's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein tyrosine phosphatase activity, metal-dependent | 6.91E-06 | GO:0030946 |
| nucleomorph | 6.91E-06 | GO:0033009 |
| TRAPP complex | 1.15E-05 | GO:0030008 |
| Rab guanyl-nucleotide exchange factor activity | 1.15E-05 | GO:0017112 |
| RNA polymerase II activity | 4.21E-05 | GO:0001055 |
| DNA-directed RNA polymerase II, core complex | 8.04E-05 | GO:0005665 |
| cytosol | 0.000131138 | GO:0005829 |
| peptidyl-tyrosine dephosphorylation | 0.000344074 | GO:0035335 |
| transcription from RNA polymerase II promoter | 0.000344074 | GO:0006366 |
| positive regulation of GTPase activity | 0.000540867 | GO:0043547 |
| ER to Golgi vesicle-mediated transport | 0.000540867 | GO:0006888 |
| multicellular organism development | 0.000703054 | GO:0007275 |
| hydrolase activity, acting on ester bonds | 0.001078099 | GO:0016788 |
| Purine metabolism | 0.002677365 | KEGG pathway |
| DNA binding | 0.038053716 | GO:0003677 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009273 | - | - |
| CRO_T012316 | AT1G51160 (2.00E-78) | SNARE-like superfamily protein |
| CRO_T017198 | AT2G35320 (2.00E-103) | ATEYA|EYES ABSENT homolog |
| CRO_T030629 | AT4G35800 (0) | NRPB1|RNA polymerase II large subunit |
| CRO_T033358 | AT5G62930 (2.00E-75) | SGNH hydrolase-type esterase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000391 | nucleomorph RNA polymerase II activity DNA-directed RNA polymerase II, core complex single-organism developmental process transcription from RNA polymerase II promoter Purine metabolism DNA binding | details |
| CFinderADM000436 | nucleomorph site of polarized growth karyogamy regulation of auxin mediated signaling pathway spindle positive gravitropism DNA-directed RNA polymerase II, core complex RNA polymerase II activity double-stranded RNA binding ribonuclease III activity Ras signaling pathway transcription from RNA polymerase II promoter protein peptidyl-prolyl isomerization RNA phosphodiester bond hydrolysis, endonucleolytic peptidyl-prolyl cis-trans isomerase activity RNA processing small GTPase mediated signal transduction protein folding nucleolus GTPase activity Purine metabolism Spliceosome GTP binding binding | details |
| CFinderADM000670 | prefoldin complex MicroRNAs in cancer small GTPase mediated signal transduction unfolded protein binding protein folding Endocytosis Protein processing in endoplasmic reticulum GTP binding integral component of membrane Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001013 | protein tyrosine phosphatase activity, metal-dependent microfibril phosphomannomutase activity GDP-mannose biosynthetic process GDP-mannose biosynthesis maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) L-ascorbate biosynthesis I (L-galactose pathway) poly(A) RNA binding peptidyl-tyrosine dephosphorylation cytoplasmic translation catalytic step 2 spliceosome Fructose and mannose metabolism mRNA splicing, via spliceosome multicellular organism development cytosolic large ribosomal subunit Ubiquitin_Proteasome_system, E3 adaptor: DWD Spliceosome Ribosome structural constituent of ribosome | details |
| CFinderADM001327 | nucleomorph DNA-directed RNA polymerase II, core complex RNA polymerase II activity transcription from RNA polymerase II promoter Purine metabolism binding DNA binding | details |
| CFinderADM001375 | positive regulation of mitochondrial translation nucleomorph mitochondrial respiratory chain complex IV assembly integral component of mitochondrial inner membrane DNA-directed RNA polymerase II, core complex RNA polymerase II activity transcription from RNA polymerase II promoter small GTPase mediated signal transduction Endocytosis Purine metabolism intracellular GTP binding binding | details |
| CFinderADM001543 | nucleomorph protein tyrosine phosphatase activity, metal-dependent Ubiquitin_Proteasome_system, DUB: JAMM RNA polymerase II activity DNA-directed RNA polymerase II, core complex transcription from RNA polymerase II promoter peptidyl-tyrosine dephosphorylation multicellular organism development ATPase activity Purine metabolism | details |
| CFinderADM001758 | nucleomorph mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) peptidyl-arginine methylation, to asymmetrical-dimethyl arginine histone arginine methylation FoxO signaling pathway DNA-directed RNA polymerase II, core complex protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity RNA polymerase II activity hydrogen ion transmembrane transporter activity transcription from RNA polymerase II promoter ATP synthesis coupled proton transport ATPase activity Purine metabolism Oxidative phosphorylation regulation of transcription, DNA-templated | details |
| CFinderADM002137 | nucleomorph rRNA (uridine-N3-)-methyltransferase activity double-stranded RNA binding phenylalanine-tRNA ligase activity phenylalanyl-tRNA aminoacylation karyogamy rRNA base methylation RNA polymerase II activity DNA-directed RNA polymerase II, core complex ribonuclease III activity Ubiquitin_Proteasome_system, E2: UBC cytoplasm transcription from RNA polymerase II promoter RNA phosphodiester bond hydrolysis, endonucleolytic protein polyubiquitination ubiquitin protein ligase binding RNA processing ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis ubiquitin protein ligase activity Purine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |