CFinderADM001808's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to ethylene | 3.79E-08 | GO:0009723 |
| regulation of ethylene-activated signaling pathway | 5.22E-05 | GO:0010104 |
| response to wounding | 0.000283285 | GO:0009611 |
| response to osmotic stress | 0.000283285 | GO:0006970 |
| response to cold | 0.000296708 | GO:0009409 |
| response to water deprivation | 0.001097724 | GO:0009414 |
| response to auxin | 0.001648794 | GO:0009733 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.001897482 | GO:0043161 |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.003492768 | kinase family |
| Plant-pathogen interaction | 0.004885117 | KEGG pathway |
| MAPK signaling pathway - plant | 0.005062297 | KEGG pathway |
| Transcription_related, Transcription factor: ERF | 0.006184413 | TF family |
| Transcription_related, Transcription factor: MYB | 0.006184413 | TF family |
| Ubiquitin_Proteasome_system, E3: U-box | 0.006184413 | ubs family |
| endoplasmic reticulum membrane | 0.006590343 | GO:0005789 |
| protein ubiquitination | 0.007764225 | GO:0016567 |
| protein binding | 0.007816465 | GO:0005515 |
| ubiquitin-protein transferase activity | 0.010821558 | GO:0004842 |
| Protein processing in endoplasmic reticulum | 0.012802801 | KEGG pathway |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.026449963 | cazy family |
| protein kinase activity | 0.030797388 | GO:0004672 |
| transcription, DNA-templated | 0.031390151 | GO:0006351 |
| Ubiquitin_Proteasome_system, E3: RING | 0.035133222 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012400 | AT3G18690 (3.00E-16) | MKS1|MAP kinase substrate 1 |
| CRO_T012901 | AT3G09830 (9.00E-163) | Protein kinase superfamily protein |
| CRO_T027317 | AT3G61630 (3.00E-22) | CRF6|cytokinin response factor 6 |
| CRO_T032202 | AT5G04760 (1.00E-58) | Duplicated homeodomain-like superfamily protein |
| CRO_T032480 | AT4G03510 (2.00E-41) | RMA1|RING membrane-anchor 1 |
| CRO_T033088 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000073 | Cytochrome_P450, Cytochrome P450: CYP709B methylthioribulose 1-phosphate dehydratase activity 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity phospholipid transporter activity acireductone synthase activity magnesium ion binding 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation ATP-binding cassette (ABC) transporter complex phospholipid transport Golgi vesicle budding L-methionine biosynthetic process from S-adenosylmethionine lagging strand elongation protein ADP-ribosylation DNA ligation involved in DNA repair phospholipid binding double-strand break repair via nonhomologous end joining NAD+ ADP-ribosyltransferase activity L-methionine biosynthetic process from methylthioadenosine phospholipid translocation DNA ligase (ATP) activity phospholipid-translocating ATPase activity nucleus chloroplast outer membrane Base excision repair chloroplast inner membrane Cysteine and methionine metabolism Transcription_related, Transcription factor: MYB 2-alkenal reductase [NAD(P)] activity dephosphorylation cytoplasm Golgi membrane oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity oxidation-reduction process trans-Golgi network vacuolar membrane Protein processing in endoplasmic reticulum endoplasmic reticulum Golgi apparatus ATP binding | details |
| CFinderADM000916 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc double-strand break repair via nonhomologous end joining protein ADP-ribosylation DNA ligation involved in DNA repair lagging strand elongation NAD+ ADP-ribosyltransferase activity DNA ligase (ATP) activity chitin binding chitinase activity chitin catabolic process Base excision repair Amino sugar and nucleotide sugar metabolism MAPK signaling pathway - plant carbohydrate metabolic process extracellular region | details |
| CFinderADM001160 | ATP-binding cassette (ABC) transporter complex phospholipid transporter activity termination of RNA polymerase II transcription regulation of ethylene-activated signaling pathway phospholipid transport RNA polymerase II core binding mRNA cleavage factor complex mRNA cleavage phospholipid binding formation of glycosidic bonds, GlycosylTransferases: GTnc mRNA polyadenylation chloroplast outer membrane chloroplast inner membrane mRNA binding response to ethylene Transcription_related, Transcription factor: Trihelix Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII response to auxin Transcription_related, Transcription factor: WRKY mRNA surveillance pathway Plant-pathogen interaction Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: MYB transferase activity, transferring glycosyl groups adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity transcription, DNA-templated | details |
| CFinderADM001526 | regulation of ethylene-activated signaling pathway peptide metabolic process response to ethylene response to auxin Transcription_related, Transcription factor: ERF metalloendopeptidase activity Plant-pathogen interaction Spliceosome proteolysis | details |
| CFinderADM001747 | dethiobiotin synthase activity adenosylmethionine-8-amino-7-oxononanoate transaminase activity rRNA (uridine-N3-)-methyltransferase activity Biotin metabolism regulation of ethylene-activated signaling pathway biotin biosynthetic process rRNA base methylation response to ethylene identical protein binding response to auxin Plant-pathogen interaction Transcription_related, Transcription factor: ERF pyridoxal phosphate binding mitochondrion | details |
Expression profiles
 Show details about module gene expression profiling |