CFinderADM001823's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyrimidine nucleotide metabolic process | 5.13E-06 | GO:0006220 |
| dCMP deaminase activity | 8.78E-06 | GO:0004132 |
| Pyrimidine metabolism | 0.000147759 | KEGG pathway |
| Transcription_related, Transcription factor: C2C2-GATA | 0.000180153 | TF family |
| Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) | 0.000266903 | kinase family |
| zinc ion binding | 0.00050464 | GO:0008270 |
| cellular process | 0.002666925 | GO:0009987 |
| intracellular part | 0.002997363 | GO:0044424 |
| sequence-specific DNA binding | 0.011461996 | GO:0043565 |
| transcription factor activity, sequence-specific DNA binding | 0.019067366 | GO:0003700 |
| protein serine/threonine kinase activity | 0.032409114 | GO:0004674 |
| regulation of transcription, DNA-templated | 0.040793505 | GO:0006355 |
| protein phosphorylation | 0.040793505 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010308 | AT2G45590 (1.00E-157) | Protein kinase superfamily protein |
| CRO_T012940 | AT1G25375 (3.00E-63) | Metallo-hydrolase/oxidoreductase superfamily protein |
| CRO_T014495 | AT3G48540 (5.00E-61) | Cytidine/deoxycytidylate deaminase family protein |
| CRO_T019191 | AT1G14300 (5.00E-111) | ARM repeat superfamily protein |
| CRO_T020381 | AT3G06740 (7.00E-17) | GATA15|GATA transcription factor 15 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000829 | Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V cytosolic proteasome complex nuclear proteasome complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process activation of MAPKK activity peptidyl-tyrosine dephosphorylation Proteasome TBP-class protein binding proteasome-activating ATPase activity MAP kinase kinase kinase activity protein tyrosine phosphatase activity Transcription_related, Transcription factor: C2C2-GATA ATP binding MAPK cascade Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular part peptidase activity cellular process Golgi apparatus sequence-specific DNA binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 intracellular | details |
| CFinderADM001561 | microfibril ubiquitin protein ligase binding Ubiquitin mediated proteolysis ubiquitin protein ligase activity protein ubiquitination | details |
| CFinderADM001735 | pyrimidine nucleotide metabolic process dCMP deaminase activity anchored component of membrane Pyrimidine metabolism response to stress unfolded protein binding protein folding Protein processing in endoplasmic reticulum cell wall chloroplast stroma | details |
| CFinderADM001822 | Pyrimidine metabolism uracil degradation I (reductive) beta-ureidopropionase activity dCMP deaminase activity pyrimidine nucleotide metabolic process uracil catabolic process Transcription_related, Transcription regulator: SWI/SNF-BAF60b Transcription_related, Transcription factor: C2C2-GATA Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) zinc ion binding formation of glycosidic bonds, GlycosylTransferases: GTnc translational initiation intracellular part integral component of membrane translation initiation factor activity cellular process sequence-specific DNA binding Golgi apparatus transcription factor activity, sequence-specific DNA binding protein serine/threonine kinase activity | details |
| CFinderADM001959 | simple leaf morphogenesis regulation of mitotic cell cycle regulation of auxin mediated signaling pathway regulation of cyclin-dependent protein serine/threonine kinase activity SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex SCF ubiquitin ligase complex Transcription_related, Transcription regulator: TRAF Transcription_related, Transcription factor: C2C2-GATA ubiquitin conjugating enzyme binding protein polyubiquitination zinc ion binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process endomembrane system intracellular part Ubiquitin_Proteasome_system, E3 adaptor: BTB cellular process Plant hormone signal transduction protein ubiquitination ubiquitin protein ligase activity ubiquitin-protein transferase activity sequence-specific DNA binding Ubiquitin_Proteasome_system, E3 adaptor: F-box Ubiquitin_Proteasome_system, E3: RING transcription factor activity, sequence-specific DNA binding nucleic acid binding regulation of transcription, DNA-templated | details |
| CFinderADM002219 | DNA catabolic process, endonucleolytic Transcription_related, Transcription regulator: HMG transmembrane receptor protein kinase activity Base excision repair protein complex DNA binding chromosome Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII mitochondrial inner membrane embryo development ending in seed dormancy extracellular region oxidoreductase activity nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |