CFinderADM001833's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to high light intensity | 7.41E-05 | GO:0009644 |
| large ribosomal subunit rRNA binding | 0.000112615 | GO:0070180 |
| response to hydrogen peroxide | 0.000135791 | GO:0042542 |
| photomorphogenesis | 0.000223637 | GO:0009640 |
| COP9 signalosome | 0.000229503 | GO:0008180 |
| ribosome biogenesis | 0.000271231 | GO:0042254 |
| response to heat | 0.000271231 | GO:0009408 |
| regulation of translational initiation | 0.000271231 | GO:0006446 |
| cytoplasmic translation | 0.000271231 | GO:0002181 |
| formation of translation preinitiation complex | 0.000271231 | GO:0001731 |
| flower development | 0.000271231 | GO:0009908 |
| eukaryotic 48S preinitiation complex | 0.000630119 | GO:0033290 |
| eukaryotic 43S preinitiation complex | 0.000630119 | GO:0016282 |
| preribosome, large subunit precursor | 0.000630119 | GO:0030687 |
| eukaryotic translation initiation factor 3 complex | 0.000630119 | GO:0005852 |
| carbohydrate binding | 0.002151293 | GO:0030246 |
| translation initiation factor activity | 0.002151293 | GO:0003743 |
| cytosolic large ribosomal subunit | 0.003836632 | GO:0022625 |
| Protein processing in endoplasmic reticulum | 0.01320697 | KEGG pathway |
| RNA transport | 0.01320697 | KEGG pathway |
| Ribosome | 0.01531873 | KEGG pathway |
| structural constituent of ribosome | 0.018461748 | GO:0003735 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002857 | AT2G40010 (1.00E-125) | Ribosomal protein L10 family protein |
| CRO_T003844 | AT3G57290 (0) | EIF3E|eukaryotic translation initiation factor 3E |
| CRO_T005266 | AT2G25310 (3.00E-46) | Protein of unknown function (DUF2012) |
| CRO_T022306 | AT4G27670 (6.00E-15) | HSP21|heat shock protein 21 |
| CRO_T024261 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000414 | lactoylglutathione lyase activity Pyruvate metabolism COP9 signalosome formation of translation preinitiation complex photomorphogenesis flower development regulation of translational initiation cytosol eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex translation initiation factor activity RNA transport hydrolase activity chloroplast | details |
| CFinderADM002060 | regulation of timing of transition from vegetative to reproductive phase histone H4-K5 acetylation regulation of histone H4 acetylation Pwp2p-containing subcomplex of 90S preribosome NuA4 histone acetyltransferase complex regulation of protein phosphatase type 2A activity protein phosphatase type 2A complex large ribosomal subunit rRNA binding protein phosphatase type 2A regulator activity regulation of flower development snoRNA binding cytoplasmic translation maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ribosome biogenesis preribosome, large subunit precursor small-subunit processome signal transduction mRNA surveillance pathway Ribosome biogenesis in eukaryotes cytosolic large ribosomal subunit Ribosome nucleic acid binding structural constituent of ribosome | details |
| CFinderADM002102 | cellular nitrogen compound metabolic process response to high light intensity gene expression response to hydrogen peroxide photomorphogenesis cellular macromolecule metabolic process COP9 signalosome formation of translation preinitiation complex response to heat regulation of translational initiation flower development primary metabolic process eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex translation initiation factor activity carbohydrate binding Protein processing in endoplasmic reticulum RNA transport Ribosome | details |
Expression profiles
 Show details about module gene expression profiling |