CFinderADM001892's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| anion transport | 7.61E-05 | GO:0006820 |
| small ribosomal subunit | 0.000683904 | GO:0015935 |
| transmembrane transporter activity | 0.001285012 | GO:0022857 |
| Transcription_related, Transcription factor: C2H2 | 0.001440997 | TF family |
| Transcription_related, Transcription factor: ERF | 0.001440997 | TF family |
| vacuolar membrane | 0.003592314 | GO:0005774 |
| Ribosome | 0.009378814 | KEGG pathway |
| transmembrane transport | 0.01326199 | GO:0055085 |
| translation | 0.01326199 | GO:0006412 |
| structural constituent of ribosome | 0.028513708 | GO:0003735 |
| nucleic acid binding | 0.028513708 | GO:0003676 |
| RNA binding | 0.028513708 | GO:0003723 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000851 | AT4G17550 (0) | AtG3Pp4|glycerol-3-phosphate permease 4 |
| CRO_T009404 | AT1G49620 (1.00E-08) | KRP7|KIP-RELATED PROTEIN 7 |
| CRO_T020242 | AT3G16770 (9.00E-15) | ATEBP|ethylene-responsive element binding protein; ERF72|ETHYLENE RESPONSE FACTOR 72; RAP2.3|RELATED TO AP2 3 |
| CRO_T022420 | AT1G58380 (2.00E-119) | XW6|Ribosomal protein S5 family protein |
| CRO_T023774 | AT1G25250 (4.00E-92) | AtIDD16|indeterminate(ID)-domain 16 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001652 | box H/ACA snoRNP complex pseudouridine synthesis small ribosomal subunit ribosome biogenesis Ribosome biogenesis in eukaryotes Spliceosome translation Ribosome | details |
| CFinderADM001973 | Pyruvate metabolism response to stress Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: ERF Ubiquitin_Proteasome_system, E3 adaptor: F-box adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity protein phosphorylation | details |
| CFinderADM002065 | protein targeting to membrane plasmodesma regulation of shoot system development vesicle docking cell differentiation SNARE interactions in vesicular transport Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase vesicle fusion calcium-dependent protein serine/threonine kinase activity signal transducer activity calmodulin-dependent protein kinase activity SNARE binding SNAP receptor activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway SNARE complex plasma membrane Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: GRAS calmodulin binding defense response signal transduction intracellular signal transduction anchored component of plasma membrane integral component of membrane nucleus Plant hormone signal transduction endoplasmic reticulum calcium ion binding sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM002142 | Lysosome transporter activity transport CTP biosynthetic process UTP biosynthetic process nucleoside diphosphate phosphorylation GTP biosynthetic process nucleoside diphosphate kinase activity adenosine deoxyribonucleotides de novo biosynthesis CMP phosphorylation guanosine deoxyribonucleotides de novo biosynthesis I guanosine ribonucleotides de novo biosynthesis purine deoxyribonucleosides salvage pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pyrimidine deoxyribonucleotide phosphorylation UTP and CTP de novo biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion small ribosomal subunit Purine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Ribosome translation intracellular RNA binding integral component of membrane structural constituent of ribosome | details |
Expression profiles
 Show details about module gene expression profiling |