CFinderADM001922's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| caffeate O-methyltransferase activity | 2.15E-05 | GO:0047763 |
| histone acetyltransferase complex | 2.56E-05 | GO:0000123 |
| poly(A)-specific ribonuclease activity | 3.75E-05 | GO:0004535 |
| CCR4-NOT complex | 3.84E-05 | GO:0030014 |
| receptor activity | 5.89E-05 | GO:0004872 |
| protein phosphatase inhibitor activity | 5.89E-05 | GO:0004864 |
| abscisic acid binding | 6.50E-05 | GO:0010427 |
| superpathway of scopolin and esculin biosynthesis | 7.61E-05 | plantCyc |
| nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 0.000124974 | GO:0000288 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.000124974 | GO:0090503 |
| regulation of protein serine/threonine phosphatase activity | 0.000124974 | GO:0080163 |
| histone acetylation | 0.000169473 | GO:0016573 |
| lignin biosynthetic process | 0.0002893 | GO:0009809 |
| phenylpropanoids methylation (ice plant) | 0.000609374 | plantCyc |
| suberin monomers biosynthesis | 0.000609374 | plantCyc |
| abscisic acid-activated signaling pathway | 0.000754475 | GO:0009738 |
| Transcription_related, Transcription factor: MYB | 0.000973148 | TF family |
| nucleus | 0.001280307 | GO:0005634 |
| protein dimerization activity | 0.003122641 | GO:0046983 |
| RNA degradation | 0.003169587 | KEGG pathway |
| MAPK signaling pathway - plant | 0.003466813 | KEGG pathway |
| Phenylpropanoid biosynthesis | 0.003718915 | KEGG pathway |
| methylation | 0.007658592 | GO:0032259 |
| nucleic acid binding | 0.016291463 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004295 | AT1G01360 (7.00E-33) | PYL9|PYRABACTIN RESISTANCE 1-LIKE 9; RCAR1|regulatory component of ABA receptor 1 |
| CRO_T014786 | AT2G31180 (5.00E-57) | ATMYB14|MYB DOMAIN PROTEIN 14 |
| CRO_T018887 | AT1G15920 (2.00E-97) | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| CRO_T020559 | AT5G54160 (3.00E-155) | ATOMT1|O-methyltransferase 1; COMT1|caffeate O-methyltransferase 1 |
| CRO_T027909 | AT4G14385 (6.00E-25) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001478 | protein import into mitochondrial outer membrane poly(A)-specific ribonuclease activity nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay RNA phosphodiester bond hydrolysis, exonucleolytic mitochondrial outer membrane translocase complex CCR4-NOT complex receptor signaling protein serine/threonine kinase activity RNA degradation MAPK signaling pathway - plant kinase activity endoplasmic reticulum membrane phosphorylation nucleic acid binding protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |