CFinderADM001927's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosolic large ribosomal subunit | 2.59E-07 | GO:0022625 |
| Ribosome | 9.00E-06 | KEGG pathway |
| translation | 4.23E-05 | GO:0006412 |
| ubiquitin-ubiquitin ligase activity | 4.56E-05 | GO:0034450 |
| structural constituent of ribosome | 4.56E-05 | GO:0003735 |
| ubiquitin ligase complex | 0.000218085 | GO:0000151 |
| ribosome biogenesis | 0.000568241 | GO:0042254 |
| RNA secondary structure unwinding | 0.000656566 | GO:0010501 |
| ubiquitin-dependent protein catabolic process | 0.001222139 | GO:0006511 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001796818 | cazy family |
| Ubiquitin_Proteasome_system, E3: U-box | 0.001895411 | ubs family |
| ATP-dependent RNA helicase activity | 0.002381031 | GO:0004004 |
| protein ubiquitination | 0.00378359 | GO:0016567 |
| ligase activity | 0.004018921 | GO:0016874 |
| Protein processing in endoplasmic reticulum | 0.004991296 | KEGG pathway |
| RNA binding | 0.018842412 | GO:0003723 |
| nucleic acid binding | 0.024437194 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004554 | AT3G16780 (2.00E-69) | Ribosomal protein L19e family protein |
| CRO_T007839 | AT1G34550 (4.00E-172) | EMB2756|EMBRYO DEFECTIVE 2756 |
| CRO_T019078 | AT5G15400 (0) | MUSE3|Mutant, snc1 -enhancing 3 |
| CRO_T019784 | AT1G69620 (6.00E-47) | RPL34|ribosomal protein L34 |
| CRO_T020301 | AT3G02065 (2.00E-140) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001866 | Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X trichome morphogenesis phenylpropanoid biosynthetic process guiding stereospecific synthesis activity proteasome-mediated ubiquitin-dependent protein catabolic process cytosolic large ribosomal subunit protein ubiquitination ubiquitin protein ligase activity Ribosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Ubiquitin_Proteasome_system, E3: RING translation protein phosphorylation structural constituent of ribosome protein serine/threonine kinase activity | details |
| CFinderADM002309 | plasma membrane integral component of membrane protein phosphatase type 2A complex spindle Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI phragmoplast formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity cellulose synthase (UDP-forming) activity cellulose biosynthetic process cytosolic large ribosomal subunit mRNA surveillance pathway signal transduction nucleolus cell wall organization cell wall plasmodesma Ribosome protein kinase activity translation structural constituent of ribosome protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |