CFinderADM001937's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| negative regulation of mitotic cell cycle | 2.14E-05 | GO:0045930 |
| iron ion homeostasis | 2.37E-05 | GO:0055072 |
| asymmetric cell division | 2.37E-05 | GO:0008356 |
| pyridoxal phosphate biosynthetic process | 2.49E-05 | GO:0042823 |
| transcription, DNA-templated | 2.49E-05 | GO:0006351 |
| radial pattern formation | 2.49E-05 | GO:0009956 |
| pyridoxamine-phosphate oxidase activity | 4.25E-05 | GO:0004733 |
| regulation of transcription, DNA-templated | 0.000130003 | GO:0006355 |
| leaf development | 0.00024489 | GO:0048366 |
| homogalacturonan degradation | 0.000286676 | plantCyc |
| Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family | 0.000553321 | kinase family |
| FMN binding | 0.000744631 | GO:0010181 |
| polygalacturonase activity | 0.000744631 | GO:0004650 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.0009569 | cazy family |
| Transcription_related, Transcription factor: GRAS | 0.001541038 | TF family |
| Transcription_related, Transcription factor: NAC | 0.001541038 | TF family |
| nucleus | 0.002596785 | GO:0005634 |
| cell wall organization | 0.004463307 | GO:0071555 |
| extracellular region | 0.008176189 | GO:0005576 |
| carbohydrate metabolic process | 0.012247145 | GO:0005975 |
| sequence-specific DNA binding | 0.013319505 | GO:0043565 |
| transcription factor activity, sequence-specific DNA binding | 0.02308061 | GO:0003700 |
| protein serine/threonine kinase activity | 0.036615125 | GO:0004674 |
| protein phosphorylation | 0.044070073 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010230 | AT1G23460 (2.00E-171) | Pectin lyase-like superfamily protein |
| CRO_T022970 | AT1G54610 (0) | Protein kinase superfamily protein |
| CRO_T024480 | AT2G04890 (3.00E-48) | SCL21|SCARECROW-like 21 |
| CRO_T024772 | AT1G12260 (2.00E-88) | ANAC007|NAC 007; EMB2749|EMBRYO DEFECTIVE 2749; VND4|VASCULAR RELATED NAC-DOMAIN PROTEIN 4 |
| CRO_T033786 | AT3G21140 (3.00E-17) | Pyridoxamine 5'-phosphate oxidase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000803 | organ senescence vegetative phase change detection of nutrient pyridoxamine-phosphate oxidase activity developmental process involved in reproduction pyridoxal phosphate biosynthetic process protein tyrosine kinase activity sugar mediated signaling pathway Apelin signaling pathway primary root development FMN binding peptidyl-tyrosine phosphorylation abscisic acid-activated signaling pathway intracellular signal transduction Ubiquitin_Proteasome_system, E3 adaptor: DWD protein serine/threonine kinase activity | details |
| CFinderADM000950 | pyridoxamine-phosphate oxidase activity protein targeting to Golgi Golgi vesicle prefusion complex stabilization Golgi to plasma membrane transport exocyst assembly pyridoxal phosphate biosynthetic process Transcription_related, Transcription factor: SBP synaptonemal complex retrograde transport, vesicle recycling within Golgi reciprocal meiotic recombination Golgi transport complex Ras signaling pathway Golgi organization exocyst retrograde vesicle-mediated transport, Golgi to ER FMN binding | details |
| CFinderADM000951 | phosphoribosyl-AMP cyclohydrolase activity phosphoribosyl-ATP diphosphatase activity pyridoxamine-phosphate oxidase activity L-histidine biosynthesis protein targeting to Golgi synaptonemal complex pyridoxal phosphate biosynthetic process histidine biosynthetic process reciprocal meiotic recombination Transcription_related, Transcription factor: SBP FMN binding Biosynthesis of amino acids proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity protein ubiquitination Ubiquitin_Proteasome_system, E3: RING chloroplast stroma | details |
| CFinderADM001146 | nuclear ubiquitin ligase complex pyridoxamine-phosphate oxidase activity detection of nutrient vegetative phase change organ senescence developmental process involved in reproduction pyridoxal phosphate biosynthetic process auxin efflux transmembrane transporter activity protein serine/threonine kinase activity transmembrane receptor protein tyrosine kinase activity Apelin signaling pathway auxin efflux auxin homeostasis sugar mediated signaling pathway Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X primary root development Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) FMN binding auxin polar transport peptidyl-tyrosine phosphorylation auxin-activated signaling pathway abscisic acid-activated signaling pathway protein binding intracellular signal transduction ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 endoplasmic reticulum transmembrane transport protein phosphorylation | details |
| CFinderADM001147 | nuclear ubiquitin ligase complex mevalonate pathway I hydroxymethylglutaryl-CoA reductase (NADPH) activity pyridoxamine-phosphate oxidase activity vegetative phase change transmembrane transport organ senescence detection of nutrient coenzyme A metabolic process developmental process involved in reproduction pyridoxal phosphate biosynthetic process auxin efflux auxin homeostasis sugar mediated signaling pathway primary root development auxin efflux transmembrane transporter activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Apelin signaling pathway isoprenoid biosynthetic process Terpenoid backbone biosynthesis auxin polar transport integral component of membrane plasma membrane FMN binding auxin-activated signaling pathway abscisic acid-activated signaling pathway NADP binding protein binding intracellular signal transduction oxidation-reduction process endoplasmic reticulum membrane transporter activity endoplasmic reticulum protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001307 | protein complex subunit organization pyridoxamine-phosphate oxidase activity pyridoxal phosphate biosynthetic process phosphate ion transport FMN binding trans-Golgi network integral component of membrane endoplasmic reticulum membrane | details |
| CFinderADM001416 | Monoterpenoid biosynthesis pyridoxamine-phosphate oxidase activity oxidoreductase activity pyridoxal phosphate biosynthetic process FMN binding cellular metabolic process single-organism metabolic process oxidation-reduction process binding | details |
| CFinderADM001470 | regulation of transcription from RNA polymerase II promoter in response to salt stress pyridoxamine-phosphate oxidase activity L-iditol 2-dehydrogenase activity pyridoxal phosphate biosynthetic process cation-transporting ATPase activity cation transmembrane transport Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family homogalacturonan degradation protein serine/threonine kinase activity FMN binding polygalacturonase activity triacylglycerol degradation hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: M-type metal ion transport Endocytosis Pentose and glucuronate interconversions protein phosphorylation protein serine/threonine phosphatase activity small GTPase mediated signal transduction Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII protein dephosphorylation metal ion binding protein dimerization activity cell wall organization | details |
| CFinderADM001660 | transporter activity pyridoxamine-phosphate oxidase activity transmembrane transport pyridoxal phosphate biosynthetic process protein serine/threonine kinase activity protein phosphorylation Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family FMN binding integral component of membrane ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 plasma membrane | details |
| CFinderADM001854 | O-acetyltransferase activity cell wall organization or biogenesis Transcription_related, Transcription factor: NAC Golgi apparatus alternative oxidase activity transcription, DNA-templated response to bacterium regulation of transcription, DNA-templated DNA binding aerobic respiration III (alternative oxidase pathway) respiratory chain cellular process nucleus | details |
| CFinderADM001966 | Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase mevalonate pathway I receptor-mediated endocytosis coenzyme A metabolic process scavenger receptor activity pyridoxamine-phosphate oxidase activity hydroxymethylglutaryl-CoA reductase (NADPH) activity pyridoxal phosphate biosynthetic process tRNA wobble uridine modification transmembrane transport protein tyrosine kinase activity oxidation-reduction process isoprenoid biosynthetic process Rho guanyl-nucleotide exchange factor activity Terpenoid backbone biosynthesis peptidyl-tyrosine phosphorylation positive regulation of GTPase activity transmembrane transporter activity FMN binding NADP binding S-adenosylmethionine-dependent methyltransferase activity endosome vacuolar membrane endoplasmic reticulum membrane integral component of membrane trans-Golgi network transporter activity methylation | details |
| CFinderADM002115 | regulation of transcription from RNA polymerase II promoter in response to salt stress cytochrome b6f complex assembly hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation polygalacturonase activity protein serine/threonine phosphatase activity protein dephosphorylation cell wall organization carbohydrate metabolic process plasmodesma extracellular region | details |
| CFinderADM002151 | pyridoxamine-phosphate oxidase activity Golgi vesicle prefusion complex stabilization pyridoxal phosphate biosynthetic process retrograde transport, vesicle recycling within Golgi Golgi organization retrograde vesicle-mediated transport, Golgi to ER Golgi transport complex FMN binding polygalacturonase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation cell wall organization carbohydrate metabolic process extracellular region | details |
| CFinderADM002287 | transmembrane histidine kinase cytokinin receptor activity cytokine binding osmosensory signaling pathway embryonic root morphogenesis carbohydrate homeostasis sulfate transport cellular response to sucrose stimulus regulation of meristem development regulation of shoot system development regulation of seed germination cytokinin-activated signaling pathway protein histidine kinase binding protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII cellular response to phosphate starvation protein phosphorylation peptidyl-histidine phosphorylation phosphorelay sensor kinase activity signal transduction by protein phosphorylation Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 spliceosomal complex phosphorelay signal transduction system Transcription_related, Transcription factor: Orphans defense response to bacterium phosphoprotein phosphatase activity mRNA splicing, via spliceosome Cysteine and methionine metabolism protein dephosphorylation methyltransferase activity ATP binding endosome Plant hormone signal transduction Spliceosome methylation endoplasmic reticulum RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |