CFinderADM002000's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Arginine biosynthesis | 2.88E-06 | KEGG pathway |
| retrograde protein transport, ER to cytosol | 2.49E-05 | GO:0030970 |
| endoplasmic reticulum lumen | 0.000137597 | GO:0005788 |
| glycerol ether metabolic process | 0.000523422 | GO:0006662 |
| ER-associated ubiquitin-dependent protein catabolic process | 0.000523422 | GO:0030433 |
| cellular response to oxidative stress | 0.000579373 | GO:0034599 |
| sulfate assimilation | 0.000579373 | GO:0000103 |
| ribosome biogenesis | 0.000681591 | GO:0042254 |
| oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 0.000810675 | GO:0016671 |
| response to salt stress | 0.001215731 | GO:0009651 |
| protein disulfide oxidoreductase activity | 0.001520604 | GO:0015035 |
| cell redox homeostasis | 0.002835308 | GO:0045454 |
| GTPase activity | 0.00405617 | GO:0003924 |
| protein folding | 0.004779976 | GO:0006457 |
| Protein processing in endoplasmic reticulum | 0.007257824 | KEGG pathway |
| GTP binding | 0.009116072 | GO:0005525 |
| chloroplast stroma | 0.027951875 | GO:0009570 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T023410 | AT1G51100 (8.00E-54) | CRR41|CHLORORESPIRATORY REDUCTION 41 |
| CRO_T023470 | - | - |
| CRO_T026419 | AT3G47450 (0) | NOA1|NO ASSOCIATED 1; NOS1|NITRIC OXIDE SYNTHASE 1; RIF1|RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1 |
| CRO_T030231 | AT3G04260 (0) | PDE324|PIGMENT DEFECTIVE 324; PTAC3|plastid transcriptionally active 3 |
| CRO_T030246 | AT5G35080 (4.00E-97) | OS9|OS9 |
| CRO_T031024 | AT1G13570 (5.00E-131) | F-box/RNI-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001593 | ER-associated ubiquitin-dependent protein catabolic process response to salt stress retrograde protein transport, ER to cytosol positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly endoplasmic reticulum lumen nuclear proteasome complex cytosolic proteasome complex proteasome regulatory particle, base subcomplex proteasome-activating ATPase activity TBP-class protein binding Transcription_related, Transcription factor: bZIP response to water deprivation abscisic acid-activated signaling pathway Proteasome heterocyclic compound binding organic cyclic compound binding peptidase activity Plant hormone signal transduction Protein processing in endoplasmic reticulum hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |