CFinderADM002026's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcription factor TFIIE complex | 1.40E-05 | GO:0005673 |
| Protein_kinases_phosphatases, PPC:1.13.2: Leucine Rich Repeat Kinase IV | 2.33E-05 | kinase family |
| xyloglucan biosynthesis | 7.27E-05 | plantCyc |
| transcription initiation from RNA polymerase II promoter | 0.000189628 | GO:0006367 |
| Basal transcription factors | 0.000406597 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000729934 | cazy family |
| translational initiation | 0.002263829 | GO:0006413 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.01781538 | cazy family |
| translation initiation factor activity | 0.02188539 | GO:0003743 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000293 | AT1G63450 (1.00E-64) | RHS8|root hair specific 8; XUT1|XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1 |
| CRO_T005409 | AT2G18510 (2.00E-12) | emb2444|embryo defective 2444 |
| CRO_T009856 | AT4G20330 (6.00E-98) | Transcription initiation factor TFIIE, beta subunit |
| CRO_T012567 | AT3G45600 (4.00E-116) | TET3|tetraspanin3 |
| CRO_T026466 | - | - |
| CRO_T027636 | AT1G44960 (2.00E-46) | SNARE associated Golgi protein family |
| CRO_T030363 | AT5G06820 (5.00E-56) | SRF2|STRUBBELIG-receptor family 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000323 | xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Steroid biosynthesis cell part | details |
| CFinderADM000437 | xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM000518 | dTTP biosynthetic process dUDP biosynthetic process dTDP biosynthetic process Protein_kinases_phosphatases, PPC:1.6.4: RKF3 Like Kinase L-tyrosine:2-oxoglutarate aminotransferase activity thymidylate kinase activity mature ribosome assembly formation of glycosidic bonds, GlycosylTransferases: GTnc uridylate kinase activity trehalose biosynthetic process L-isoleucine degradation I L-leucine degradation I L-phenylalanine biosynthesis III (cytosolic, plants) pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) xyloglucan biosynthesis L-phenylalanine:2-oxoglutarate aminotransferase activity 2-oxoisovalerate decarboxylation to isobutanoyl-CoA pyrimidine deoxyribonucleotides de novo biosynthesis I Propanoate metabolism cellular amino acid metabolic process CDP-diacylglycerol biosynthesis I L-valine degradation I translational elongation biosynthetic process diacylglycerol and triacylglycerol biosynthesis translation elongation factor activity Pyrimidine metabolism benzoate biosynthesis I (CoA-dependent, β-oxidative) transferase activity, transferring acyl groups other than amino-acyl groups transferase activity, transferring acyl groups Glycerolipid metabolism Biosynthesis of amino acids Ribosome biogenesis in eukaryotes intracellular protein transport GTPase activity pyridoxal phosphate binding Starch and sucrose metabolism | details |
| CFinderADM000830 | xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001076 | xyloglucan biosynthesis magnesium ion transport magnesium ion transmembrane transport magnesium ion transmembrane transporter activity formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotidyltransferase activity | details |
| CFinderADM001159 | xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc xyloglucan biosynthetic process fucose biosynthetic process endomembrane system organization plastid envelope 3-hydroxyacyl-CoA dehydrogenase activity integral component of Golgi membrane fatty acid metabolic process unsaturated, even numbered fatty acid β-oxidation salicylic acid mediated signaling pathway unidimensional cell growth fatty acid β-oxidation II (peroxisome) NAD/NADH phosphorylation and dephosphorylation aerobic respiration III (alternative oxidase pathway) aerobic respiration I (cytochrome c) protein transport Fatty acid metabolism RNA degradation very long chain fatty acid biosynthesis II transferase activity, transferring glycosyl groups trans-Golgi network endosome intracellular membrane-bounded organelle RNA binding | details |
| CFinderADM001614 | plastid envelope xyloglucan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc detoxification of reactive carbonyls in chloroplasts protein transport peptidase activity Protein processing in endoplasmic reticulum | details |
| CFinderADM001896 | transcription factor TFIIE complex Protein_kinases_phosphatases, PPC:1.13.2: Leucine Rich Repeat Kinase IV Protein_kinases_phosphatases, PPC:1.13.5: Leucine Rich Repeat Kinase III anaphase-promoting complex binding ubiquitin-protein transferase activator activity volatile benzenoid biosynthesis I (ester formation) transcription initiation from RNA polymerase II promoter protein phosphorylation Basal transcription factors regulation of catalytic activity cell division translational initiation Ubiquitin mediated proteolysis translation initiation factor activity Ubiquitin_Proteasome_system, E3 adaptor: DWD adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 ATP binding protein kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |