CFinderADM002061's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyruvate fermentation to lactate | 1.96E-06 | plantCyc |
| L-lactate dehydrogenase activity | 5.37E-06 | GO:0004459 |
| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity | 5.37E-06 | GO:0046538 |
| regulation of pentose-phosphate shunt | 1.48E-05 | GO:0043456 |
| MCM complex | 4.14E-05 | GO:0042555 |
| THO complex | 4.14E-05 | GO:0000347 |
| gluconeogenesis | 6.79E-05 | GO:0006094 |
| cellular protein modification process | 6.79E-05 | GO:0006464 |
| carboxylic acid metabolic process | 6.79E-05 | GO:0019752 |
| DNA helicase activity | 7.86E-05 | GO:0003678 |
| DNA replication initiation | 0.000103629 | GO:0006270 |
| DNA duplex unwinding | 0.000246348 | GO:0032508 |
| glycolysis I (from glucose 6-phosphate) | 0.000464824 | plantCyc |
| glycolytic process | 0.000493794 | GO:0006096 |
| DNA replication | 0.000518309 | KEGG pathway |
| Glycolysis / Gluconeogenesis | 0.000518309 | KEGG pathway |
| ligase activity | 0.002679281 | GO:0016874 |
| carbohydrate metabolic process | 0.011118216 | GO:0005975 |
| Ubiquitin_Proteasome_system, E3: RING | 0.011727555 | ubs family |
| Carbon metabolism | 0.013603014 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005336 | AT3G29010 (2.00E-93) | Biotin/lipoate A/B protein ligase family |
| CRO_T009158 | AT5G46280 (0) | MCM3|MINICHROMOSOME MAINTENANCE 3 |
| CRO_T011789 | AT1G04410 (3.00E-04) | c-NAD-MDH1|cytosolic-NAD-dependent malate dehydrogenase 1 |
| CRO_T012151 | AT1G22170 (2.00E-130) | Phosphoglycerate mutase family protein |
| CRO_T020984 | AT3G03550 (4.00E-20) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000124 | methyl indole-3-acetate interconversion pyruvate fermentation to lactate L-lactate dehydrogenase activity jasmonate O-methyltransferase activity adenine phosphoribosyltransferase activity geranyl diphosphate biosynthesis (3S)-linalool biosynthesis AMP salvage adenine salvage adenine and adenosine salvage II hydrolase activity, hydrolyzing O-glycosyl compounds polyisoprenoid biosynthesis trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) crocetin esters biosynthesis homogalacturonan biosynthesis carboxylic acid metabolic process pollen sperm cell differentiation cellular component organization methylation ethylene-activated signaling pathway polysaccharide catabolic process glycerol-3-phosphate 2-O-acyltransferase activity isoprenoid biosynthetic process flavonoid metabolic process glycerol transport water transport cellular water homeostasis transferase activity, transferring alkyl or aryl (other than methyl) groups toxin catabolic process carbohydrate metabolic process water channel activity glycerol channel activity membrane plastoglobule cytoplasm UDP-glucosyltransferase activity ion transmembrane transport secologanin and strictosidine biosynthesis non-membrane spanning protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI single-organism process glutathione metabolic process peptidyl-tyrosine phosphorylation Transcription_related, Transcription factor: G2-like glutathione transferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc hydrogen peroxide catabolic process lyase activity Glutathione metabolism Glycerolipid metabolism Glycolysis / Gluconeogenesis NF-kappa B signaling pathway Protein export Terpenoid backbone biosynthesis polysaccharide binding | details |
| CFinderADM000638 | pyruvate fermentation to lactate 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity L-lactate dehydrogenase activity ATPase activator activity regulation of pentose-phosphate shunt positive regulation of ATPase activity cation-transporting ATPase activity carboxylic acid metabolic process cellular component organization gluconeogenesis cellular protein modification process cation transmembrane transport chaperone binding glycolysis I (from glucose 6-phosphate) glycolytic process Glycolysis / Gluconeogenesis Transcription_related, Transcription regulator: PHD Protein export protein transport ligase activity | details |
| CFinderADM001527 | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity 2-hydroxyglutarate dehydrogenase activity (R)-2-hydroxyglutarate dehydrogenase activity regulation of pentose-phosphate shunt photosystem II oxygen evolving complex assembly cation-transporting ATPase activity gluconeogenesis photorespiration cation transmembrane transport nitrogen compound metabolic process Ubiquitin_Proteasome_system, E2: UBC glycolysis I (from glucose 6-phosphate) glycolytic process flavin adenine dinucleotide binding calcium ion binding Carbon metabolism integral component of plasma membrane endoplasmic reticulum | details |
| CFinderADM001813 | Carbon metabolism UDP-galactose transmembrane transporter activity 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity formamidase activity UDP-glucose transmembrane transporter activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides UDP-galactose transmembrane transport regulation of pentose-phosphate shunt root hair cell development UDP-glucose transport lateral root development gluconeogenesis glycolysis I (from glucose 6-phosphate) glycolytic process protein serine/threonine phosphatase activity protein dephosphorylation Golgi apparatus | details |
Expression profiles
 Show details about module gene expression profiling |