CFinderADM002120's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transport | 0.011896554 | GO:0006810 |
| intracellular | 0.015796479 | GO:0005622 |
| protein phosphorylation | 0.038498846 | GO:0006468 |
| nucleic acid binding | 0.044153796 | GO:0003676 |
| protein serine/threonine kinase activity | 0.044153796 | GO:0004674 |
| nucleotide binding | 0.044153796 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002900 | AT1G11570 (3.00E-05) | NTL|NTF2-like |
| CRO_T003059 | - | - |
| CRO_T012102 | AT1G14710 (1.00E-13) | hydroxyproline-rich glycoprotein family protein |
| CRO_T022416 | - | - |
| CRO_T032876 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000389 | positive regulation of cilium assembly axoneme assembly regulation of cilium beat frequency involved in ciliary motility positive regulation of cilium-dependent cell motility establishment of protein localization to organelle ciliary basal body axonemal outer doublet microtubule associated complex axonemal microtubule axonemal central pair motile cilium S-methyl-5-thio-α-D-ribose 1-phosphate degradation acetylglucosaminyltransferase activity Transcription_related, Transcription factor: WRKY protein glycosylation N-Glycan biosynthesis Golgi apparatus transport integral component of membrane | details |
| CFinderADM000673 | calcium ion binding | details |
| CFinderADM000674 | details | |
| CFinderADM001193 | Golgi vesicle budding nucleic acid binding uridylate kinase activity cytidylate kinase activity pyrimidine nucleotide biosynthetic process phospholipid-translocating ATPase activity nucleotide binding phospholipid translocation 'de novo' pyrimidine nucleobase biosynthetic process CMP phosphorylation UTP and CTP de novo biosynthesis nucleotide phosphorylation pyrimidine ribonucleotides interconversion Pyrimidine metabolism mRNA surveillance pathway magnesium ion binding ATP binding transport Golgi membrane trans-Golgi network intracellular | details |
| CFinderADM001278 | RNA splicing, via endonucleolytic cleavage and ligation long-day photoperiodism, flowering mRNA transport histone H3-K36 methylation primary miRNA processing histone H3-K4 methylation Golgi vesicle prefusion complex stabilization nuclear cap binding complex mRNA cis splicing, via spliceosome RNA cap binding retrograde transport, vesicle recycling within Golgi negative regulation of flower development Cul4-RING E3 ubiquitin ligase complex membrane coat Golgi transport complex Golgi organization retrograde vesicle-mediated transport, Golgi to ER glucose transmembrane transport Ubiquitin_Proteasome_system, E2: UBC structural molecule activity glucose import proton transport sugar:proton symporter activity glucose transmembrane transporter activity ubiquitin-dependent protein catabolic process response to abscisic acid vesicle-mediated transport RNA degradation intracellular protein transport protein ubiquitination ligase activity serine-type endopeptidase activity ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD integral component of plasma membrane Ribosome Spliceosome transport | details |
| CFinderADM001287 | acireductone dioxygenase [iron(II)-requiring] activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-methionine biosynthetic process from methylthioadenosine Cysteine and methionine metabolism iron ion binding | details |
| CFinderADM001385 | chloroplast thylakoid calcium ion binding nucleotide binding | details |
| CFinderADM001492 | polyubiquitin binding response to cadmium ion Transcription_related, Transcription factor: GRAS nucleus sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated cytosol | details |
| CFinderADM001849 | Protein_kinases_phosphatases, PPC:1.13.1: Leucine Rich Repeat Kinase VII positive regulation of translational elongation translational frameshifting positive regulation of translational termination oxidoreductase activity cellular metabolic process ribosome binding translation elongation factor activity single-organism metabolic process translational initiation Phenylpropanoid biosynthesis translation initiation factor activity kinase activity phosphorylation binding | details |
| CFinderADM002238 | Transcription_related, Transcription factor: NF-YA plastoglobule Antigen processing and presentation ATPase activity | details |
Expression profiles
 Show details about module gene expression profiling |