CFinderADM002138's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| integral component of chloroplast outer membrane | 1.71E-05 | GO:0031359 |
| amidase activity | 2.93E-05 | GO:0004040 |
| cytoplasmic microtubule organization | 5.95E-05 | GO:0031122 |
| carbon-nitrogen ligase activity, with glutamine as amido-N-donor | 9.64E-05 | GO:0016884 |
| Arginine and proline metabolism | 0.000109146 | KEGG pathway |
| microtubule-severing ATPase activity | 0.000246022 | GO:0008568 |
| embryo development ending in seed dormancy | 0.00115397 | GO:0009793 |
| ATP binding | 0.004401717 | GO:0005524 |
| nucleic acid binding | 0.019990503 | GO:0003676 |
| nucleotide binding | 0.024491631 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010845 | AT3G29180 (5.00E-116) | Protein of unknown function (DUF1336) |
| CRO_T012853 | AT1G64110 (0) | DAA1|DUO1-activated ATPase 1 |
| CRO_T014949 | AT1G70650 (4.00E-58) | Ran BP2/NZF zinc finger-like superfamily protein |
| CRO_T031732 | AT1G63130 (2.00E-27) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T033239 | AT3G52380 (6.00E-20) | CP33|chloroplast RNA-binding protein 33; PDE322|PIGMENT DEFECTIVE 322 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000409 | RNA secondary structure unwinding ATP-dependent RNA helicase activity Elongator holoenzyme complex nucleic acid binding xylogalacturonan biosynthesis regulation of gene expression formation of glycosidic bonds, GlycosylTransferases: GTnc rRNA processing translational initiation translation initiation factor activity RNA transport ATP binding nucleotide binding | details |
| CFinderADM001173 | histone acetyltransferase binding H3 histone acetyltransferase activity histone H3 acetylation root morphogenesis RNA polymerase II transcriptional preinitiation complex assembly transcription factor binding DNA topoisomerase activity histone acetyltransferase complex transcription factor TFIID complex chloroplast RNA processing Notch signaling pathway Transcription_related, Transcription regulator: GNAT adenosine ribonucleotides de novo biosynthesis transcription coactivator activity transcription regulatory region DNA binding response to light stimulus flower development Basal transcription factors Peroxisome regulation of transcription from RNA polymerase II promoter chloroplast unfolded protein binding zinc ion binding embryo development ending in seed dormancy protein folding ATP binding | details |
| CFinderADM001186 | coenzyme A metabolic process histidyl-tRNA aminoacylation histidine-tRNA ligase activity hydroxymethylglutaryl-CoA reductase (NADPH) activity mevalonate pathway I Transcription_related, Transcription factor: C2C2-Dof vacuolar transport isoprenoid biosynthetic process Aminoacyl-tRNA biosynthesis Terpenoid backbone biosynthesis NADP binding Endocytosis endoplasmic reticulum membrane intracellular nucleic acid binding nucleotide binding | details |
| CFinderADM001244 | (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity Elongator holoenzyme complex integral component of chloroplast outer membrane protein tetramerization 'de novo' AMP biosynthetic process amidase activity 'de novo' IMP biosynthetic process inosine-5'-phosphate biosynthesis II superpathway of scopolin and esculin biosynthesis carbon-nitrogen ligase activity, with glutamine as amido-N-donor O-methyltransferase activity adenosine ribonucleotides de novo biosynthesis Arginine and proline metabolism phenylpropanoids methylation (ice plant) suberin monomers biosynthesis Transcription_related, Transcription factor: ERF protein dimerization activity Phenylpropanoid biosynthesis Purine metabolism methylation transcription factor activity, sequence-specific DNA binding transcription, DNA-templated nucleic acid binding | details |
| CFinderADM001651 | potassium ion binding pyruvate kinase activity nucleic acid binding nucleotide binding glycolytic process glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt magnesium ion binding kinase activity Carbon metabolism | details |
| CFinderADM001843 | embryo development ending in seed dormancy Endocytosis nucleic acid binding nucleotide binding mitochondrion chloroplast | details |
| CFinderADM002027 | tetracyclic triterpenoid biosynthetic process calcium:proton antiporter activity cycloartenol synthase activity plant sterol biosynthesis II mangrove triterpenoid biosynthesis cytoplasmic microtubule organization calcium ion transmembrane transport Steroid biosynthesis plant sterol biosynthesis microtubule-severing ATPase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis | details |
Expression profiles
 Show details about module gene expression profiling |