CFinderADM002140's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| root hair cell development | 5.13E-06 | GO:0080147 |
| UDP-galactose transmembrane transport | 5.13E-06 | GO:0072334 |
| lateral root development | 6.40E-06 | GO:0048527 |
| UDP-glucose transport | 6.40E-06 | GO:0015786 |
| UDP-glucose transmembrane transporter activity | 6.90E-06 | GO:0005460 |
| UDP-galactose transmembrane transporter activity | 6.90E-06 | GO:0005459 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 8.48E-06 | cazy family |
| glycogen (starch) synthase activity | 2.59E-05 | GO:0004373 |
| starch binding | 2.59E-05 | GO:2001070 |
| MAPK signaling pathway - yeast | 2.82E-05 | KEGG pathway |
| protein domain specific binding | 4.18E-05 | GO:0019904 |
| starch biosynthesis | 5.95E-05 | plantCyc |
| Golgi apparatus | 0.009270056 | GO:0005794 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008501 | AT3G01180 (1.00E-33) | AtSS2|starch synthase 2 |
| CRO_T012388 | AT3G18390 (1.00E-135) | EMB1865|embryo defective 1865 |
| CRO_T014883 | AT5G11280 (1.00E-66) | unknown protein |
| CRO_T017444 | - | - |
| CRO_T032808 | AT1G78220 (3.00E-57) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000711 | Influenza A uroporphyrinogen-III synthase activity UDP-galactose transmembrane transporter activity formamidase activity UDP-glucose transmembrane transporter activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides root hair cell development UDP-galactose transmembrane transport production of miRNAs involved in gene silencing by miRNA aging histone H4-K5 acetylation regulation of timing of transition from vegetative to reproductive phase ncRNA processing lateral root development tetrapyrrole biosynthetic process UDP-glucose transport NuA4 histone acetyltransferase complex nuclear pore inner ring nuclear pore organization shoot system development reproductive structure development protein import into nucleus, docking Carbon metabolism Stilbenoid, diarylheptanoid and gingerol biosynthesis structural constituent of nuclear pore myricetin 3'-O-methyltransferase activity 11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity single organism reproductive process regulation of flower development alkaloid biosynthetic process cytokinins 7-N-glucoside biosynthesis cytokinins 9-N-glucoside biosynthesis aromatic compound biosynthetic process cellular response to oxidative stress sulfate assimilation oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Transcription_related, Transcription factor: PLATZ quercetin glucoside biosynthesis (Allium) Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: PHD Ubiquitin_Proteasome_system, E3: RING syringetin biosynthesis quercetin gentiotetraside biosynthesis phenylpropanoids methylation (ice plant) protein disulfide oxidoreductase activity protein homodimerization activity quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity cell redox homeostasis regulation of transcription, DNA-templated flavonoid glucuronidation Transcription_related, Transcription factor: NAC flavonoid biosynthetic process intracellular signal transduction | details |
| CFinderADM000851 | cholesterol binding microtubule organizing center organization SREBP signaling pathway formation of glycosidic bonds, GlycosylTransferases: GTnc microtubule nucleation starch binding glycogen (starch) synthase activity spindle assembly cytokinesis by cell plate formation starch biosynthesis mitotic nuclear division ER-associated ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding endoplasmic reticulum membrane | details |
| CFinderADM001323 | Biotin metabolism biotin biosynthesis from 8-amino-7-oxononanoate I dethiobiotin synthase activity adenosylmethionine-8-amino-7-oxononanoate transaminase activity biotin biosynthetic process heat shock protein binding response to heat metal ion binding identical protein binding unfolded protein binding protein folding pyridoxal phosphate binding chloroplast envelope chloroplast thylakoid membrane mitochondrion | details |
| CFinderADM001476 | MAPK signaling pathway - yeast heme biosynthesis I (aerobic) protein domain specific binding 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) oxidoreductase activity chloroplast | details |
| CFinderADM001774 | MAPK signaling pathway - yeast nucleic acid binding protein domain specific binding DNA-directed RNA polymerase activity helicase activity DNA repair vesicle-mediated transport serine-type endopeptidase activity proteolysis transcription, DNA-templated | details |
| CFinderADM001813 | Carbon metabolism UDP-galactose transmembrane transporter activity 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity formamidase activity UDP-glucose transmembrane transporter activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides UDP-galactose transmembrane transport regulation of pentose-phosphate shunt root hair cell development UDP-glucose transport lateral root development gluconeogenesis glycolysis I (from glucose 6-phosphate) glycolytic process protein serine/threonine phosphatase activity protein dephosphorylation Golgi apparatus | details |
| CFinderADM002010 | organ boundary specification between lateral organs and the meristem ATP-dependent chromatin remodeling regulation of gene expression, epigenetic MAPK signaling pathway - yeast cytoplasmic microtubule organization DNA-dependent ATPase activity protein domain specific binding microtubule-severing ATPase activity Transcription_related, Transcription regulator: SNF2 chromatin binding response to stimulus nucleus ATP binding regulation of transcription, DNA-templated cytosol | details |
| CFinderADM002297 | Spliceosome formation of glycosidic bonds, GlycosylTransferases: GTnc RNA cap binding mannosyltransferase activity mRNA cis splicing, via spliceosome nuclear cap binding complex GPI anchor biosynthetic process spliceosomal complex assembly post-mRNA release spliceosomal complex catalytic step 1 spliceosome Prp19 complex prespliceosome Glycosylphosphatidylinositol(GPI)-anchor biosynthesis precatalytic spliceosome catalytic step 2 spliceosome Plant-pathogen interaction endoplasmic reticulum membrane calcium ion binding nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |