CFinderADM002161's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| SAGA-type complex | 6.93E-06 | GO:0070461 |
| thiol-dependent ubiquitinyl hydrolase activity | 2.14E-05 | GO:0036459 |
| HAUS complex | 2.60E-05 | GO:0070652 |
| FoxO signaling pathway | 5.19E-05 | KEGG pathway |
| spindle assembly | 6.35E-05 | GO:0051225 |
| Ubiquitin_Proteasome_system, DUB: USP | 8.88E-05 | ubs family |
| protein deubiquitination | 0.000145677 | GO:0016579 |
| Cutin, suberine and wax biosynthesis | 0.000172685 | KEGG pathway |
| ubiquitin-dependent protein catabolic process | 0.000817828 | GO:0006511 |
| Protein processing in endoplasmic reticulum | 0.006603485 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000940 | AT3G11910 (0) | UBP13|ubiquitin-specific protease 13 |
| CRO_T021266 | AT1G70670 (8.00E-73) | AtCLO4|caleosin 4; PXG4|peroxygenase 4 |
| CRO_T024530 | AT2G24530 (1.00E-82) | unknown protein |
| CRO_T028586 | AT5G40740 (0) | 6-Aug|augmin subunit 6 |
| CRO_T030376 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001680 | membrane-bounded organelle cellular protein localization CCR4-NOT complex intracellular transport autophagosome assembly RNA phosphodiester bond hydrolysis, exonucleolytic nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 3'-5'-exoribonuclease activity cellular protein metabolic process cytoplasmic part RNA degradation Ubiquitin_Proteasome_system, E3: U-box Protein processing in endoplasmic reticulum catalytic activity transferase activity Ubiquitin_Proteasome_system, E3: RING nucleic acid binding | details |
| CFinderADM001962 | Protein processing in endoplasmic reticulum L-ascorbate degradation V ascorbate glutathione cycle Ascorbate and aldarate metabolism seed maturation Ubiquitin_Proteasome_system, E2: UBC seed germination cytoplasm defense response to bacterium ubiquitin protein ligase binding cellular oxidant detoxification response to oxidative stress ubiquitin protein ligase activity peroxidase activity protein ubiquitination intracellular membrane-bounded organelle heme binding | details |
Expression profiles
 Show details about module gene expression profiling |