CFinderADM002239's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chromosome organization | 0.000126439 | GO:0051276 |
| Cell cycle | 0.000533805 | KEGG pathway |
| cellulose biosynthetic process | 0.000594986 | GO:0030244 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.000594986 | GO:0000462 |
| cellulose synthase (UDP-forming) activity | 0.000690899 | GO:0016760 |
| chromosome | 0.000866656 | GO:0005694 |
| cytosolic small ribosomal subunit | 0.001343676 | GO:0022627 |
| intracellular signal transduction | 0.002273278 | GO:0035556 |
| Ribosome | 0.013026131 | KEGG pathway |
| translation | 0.017616303 | GO:0006412 |
| intracellular | 0.018506955 | GO:0005622 |
| structural constituent of ribosome | 0.023077185 | GO:0003735 |
| hydrolase activity | 0.023077185 | GO:0016787 |
| integral component of membrane | 0.034531437 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005560 | AT2G16050 (4.00E-68) | Cysteine/Histidine-rich C1 domain family protein |
| CRO_T015333 | AT2G36290 (2.00E-124) | alpha/beta-Hydrolases superfamily protein |
| CRO_T017378 | AT5G61450 (4.00E-116) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T027912 | AT1G30690 (1.00E-77) | Sec14p-like phosphatidylinositol transfer family protein |
| CRO_T029796 | AT5G59240 (3.00E-79) | Ribosomal protein S8e family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000405 | Protein_kinases_phosphatases, PPC:2.1.1: Light Sensor Kinase Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX ATP binding cutin biosynthetic process chromosome organization glycerol-3-phosphate 2-O-acyltransferase activity CDP-diacylglycerol biosynthesis I phosphatase activity diacylglycerol and triacylglycerol biosynthesis Cell cycle Glycerolipid metabolism chromosome unfolded protein binding dephosphorylation protein folding protein kinase activity protein phosphorylation | details |
| CFinderADM000748 | regulation of signal transduction β-alanine biosynthesis II trans-cinnamoyl-CoA biosynthesis 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis long-chain fatty acid activation D-myo-inositol (1,4,5)-trisphosphate biosynthesis fatty acid β-oxidation II (peroxisome) oleate biosynthesis I (plants) 3-phosphoinositide biosynthesis cutin biosynthesis Flavonoid biosynthesis stearate biosynthesis II (bacteria and plants) integral component of membrane sporopollenin precursors biosynthesis phosphatidylcholine acyl editing suberin monomers biosynthesis palmitate biosynthesis II (bacteria and plants) Phenylpropanoid biosynthesis intracellular signal transduction protein ubiquitination ubiquitin-protein transferase activity catalytic activity metabolic process intracellular | details |
| CFinderADM001723 | cellular lipid metabolic process regulation of signal transduction carboxylic ester hydrolase activity 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis integral component of membrane intracellular signal transduction protein ubiquitination ubiquitin-protein transferase activity intracellular zinc ion binding | details |
| CFinderADM001771 | nonaprenyl diphosphate biosynthesis II dimethylallyltranstransferase activity isoprenoid biosynthetic process ABC transporters Terpenoid backbone biosynthesis ATPase activity, coupled to transmembrane movement of substances transmembrane transport | details |
| CFinderADM002070 | organic acid transmembrane transport organic acid transmembrane transporter activity translational elongation nucleotidyltransferase activity translation elongation factor activity intracellular signal transduction RNA transport GTPase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding integral component of plasma membrane intracellular | details |
Expression profiles
 Show details about module gene expression profiling |