CFinderADM002285's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ErbB signaling pathway | 1.83E-05 | KEGG pathway |
| heterochromatin assembly | 4.39E-05 | GO:0031507 |
| chromatin silencing complex | 4.83E-05 | GO:0005677 |
| chromatin | 6.32E-05 | GO:0000785 |
| transcription regulatory region sequence-specific DNA binding | 6.37E-05 | GO:0000976 |
| Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family | 6.86E-05 | kinase family |
| Transcription_related, Transcription regulator: PHD | 0.000172076 | TF family |
| chromatin silencing | 0.000223346 | GO:0006342 |
| RNA secondary structure unwinding | 0.000626062 | GO:0010501 |
| rRNA processing | 0.000626062 | GO:0006364 |
| protein autophosphorylation | 0.000711693 | GO:0046777 |
| chromatin binding | 0.001732465 | GO:0003682 |
| cytosolic large ribosomal subunit | 0.002767898 | GO:0022625 |
| ATP-dependent RNA helicase activity | 0.002829275 | GO:0004004 |
| ATP binding | 0.007765962 | GO:0005524 |
| Ribosome | 0.008684087 | KEGG pathway |
| translation | 0.016797857 | GO:0006412 |
| nucleic acid binding | 0.033185893 | GO:0003676 |
| structural constituent of ribosome | 0.033185893 | GO:0003735 |
| protein serine/threonine kinase activity | 0.036615125 | GO:0004674 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005155 | AT2G02470 (0.001) | AL6|alfin-like 6 |
| CRO_T020522 | AT5G43490 (1.00E-16) | unknown protein |
| CRO_T022199 | AT1G06390 (0) | ATSK2-3|A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3; ATSK22|SHAGGY-LIKE PROTEIN KINASE 22; BIL2|BIN2-LIKE 2; GSK1|GSK3/SHAGGY-like protein kinase 1 |
| CRO_T023628 | AT1G02780 (2.00E-72) | emb2386|embryo defective 2386 |
| CRO_T023831 | AT3G09720 (0) | RH57|RNA helicase 57 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001542 | endosperm development determination of bilateral symmetry polar nucleus fusion ribosomal large subunit biogenesis rRNA processing RNA secondary structure unwinding embryo development ending in seed dormancy ATP-dependent RNA helicase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD nucleic acid binding | details |
| CFinderADM001944 | plastid chromosome nucleic acid binding Transcription_related, Transcription regulator: SET substrate-specific transmembrane transporter activity 3'-5' exonuclease activity RNA secondary structure unwinding rRNA processing carbohydrate transport nucleic acid phosphodiester bond hydrolysis ATP-dependent RNA helicase activity 2-alkenal reductase [NAD(P)] activity transmembrane transport | details |
| CFinderADM001979 | Central carbon metabolism in cancer NAD(P)+-protein-arginine ADP-ribosyltransferase activity NAD+ binding cell wall spindle U12-type spliceosomal complex homogalacturonan degradation phragmoplast U2 snRNP hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 precatalytic spliceosome catalytic step 2 spliceosome pectinesterase inhibitor activity aspartyl esterase activity pectinesterase activity cell wall modification negative regulation of catalytic activity pectin catabolic process mRNA splicing, via spliceosome ribosome biogenesis auxin-activated signaling pathway Pentose and glucuronate interconversions GTPase activity Spliceosome nucleolus GTP binding extracellular region transcription, DNA-templated | details |
| CFinderADM002103 | Cul3-RING ubiquitin ligase complex response to red light Transcription_related, Transcription factor: SBP rRNA processing RNA secondary structure unwinding Ubiquitin_Proteasome_system, E3 adaptor: BTB ATP-dependent RNA helicase activity protein ubiquitination ubiquitin-protein transferase activity nucleic acid binding | details |
Expression profiles
 Show details about module gene expression profiling |